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5330439K02Rik Gene Detail
Summary
  • Symbol
    5330439K02Rik
  • Name
    RIKEN cDNA 5330439K02 gene
Location &
Maps
more
  • Sequence Map
    Chr15:100357621-100366572 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.31 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    72 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925532
 lncRNA gene Chr15:100337125-100366572 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005624
 lincRNA gene Chr15:102417284-102431701 (-)
A/J MGP_AJ_G0005611
 lincRNA gene Chr15:98384880-98393787 (-)
AKR/J MGP_AKRJ_G0005590
 lincRNA gene Chr15:101395382-101405636 (-)
BALB/cJ MGP_BALBcJ_G0005591
 lincRNA gene Chr15:98505561-98514258 (-)
C3H/HeJ MGP_C3HHeJ_G0005538
 lincRNA gene Chr15:101470184-101479400 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005749
 lincRNA gene Chr15:106259865-106271346 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005114
 lincRNA gene Chr15:94156713-94165920 (-)
CAST/EiJ MGP_CASTEiJ_G0005482
 lincRNA gene Chr15:102477940-102479846 (+)
CBA/J MGP_CBAJ_G0005528
 lincRNA gene Chr15:109914137-109923693 (-)
DBA/2J MGP_DBA2J_G0005543
 lincRNA gene Chr15:97751536-97762385 (-)
FVB/NJ MGP_FVBNJ_G0005570
 lincRNA gene Chr15:96765351-96774292 (-)
LP/J MGP_LPJ_G0005627
 lincRNA gene Chr15:102594727-102603423 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005555
 lincRNA gene Chr15:113633681-113643896 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005749
 lincRNA gene Chr15:101403810-101412535 (-)
PWK/PhJ MGP_PWKPhJ_G0005431
 lincRNA gene Chr15:97878947-97888372 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005349
 lincRNA gene Chr15:101294964-101303689 (-)
WSB/EiJ MGP_WSBEiJ_G0005532
 lincRNA gene Chr15:102030826-102039457 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 5330439K02Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097827 Ensembl Gene Model | MGI Sequence Detail 8952 C57BL/6J ±  kb
transcript ENSMUST00000180953 Ensembl | MGI Sequence Detail 2312 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 25
    Phenotypes 17
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory