4921539H07Rik Gene Detail

Summary

• Symbol
  4921539H07Rik
• Name
  RIKEN cDNA 4921539H07 gene
• Synonyms
  Gm2668

• Feature Type
  lncRNA gene
• IDs
  MGI:1925506
  NCBI Gene: 78256
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:58024474-58075141 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1563 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925506	lncRNA gene	Chr3:58024474-58075141 (+)
129S1/SvImJ	ENSMUSG00200023648	lncRNA gene	Chr3:54895693-54946260 (+)
A/J	ENSMUSG00195032912	lncRNA gene	Chr3:54812437-54863000 (+)
AKR/J	ENSMUSG00220030378	lncRNA gene	Chr3:54865518-54916091 (+)
BALB/cJ	ENSMUSG00180025979	lncRNA gene	Chr3:54892200-54942777 (+)
C3H/HeJ	ENSMUSG00175008765	lncRNA gene	Chr3:54733578-54784149 (+)
C57BL/6NJ	ENSMUSG00215009452	lncRNA gene	Chr3:55177658-55228226 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005634	lincRNA gene	Chr3:51528188-51579980 (+)
CAST/EiJ	ENSTCUG00005002522	lncRNA gene	Chr3:54497941-54553058 (+)
CBA/J	ENSMUSG00210004142	lncRNA gene	Chr3:54849298-54899867 (+)
DBA/2J	ENSMUSG00185028098	lncRNA gene	Chr3:55018956-55069529 (+)
FVB/NJ	ENSMUSG00205003963	lncRNA gene	Chr3:54003558-54054576 (+)
JF1/MsJ	ENSUMUG00000003475	lncRNA gene	Chr3:54421185-54487861 (+)
LP/J	ENSMUSG00230004519	lncRNA gene	Chr3:57032410-57082973 (+)
NOD/ShiLtJ	ENSMUSG00190032267	lncRNA gene	Chr3:55210338-55260909 (+)
NZO/HlLtJ	ENSMUSG00225018564	lncRNA gene	Chr3:59644866-59695431 (+)
PWK/PhJ	ENSLUMG00010005317	lncRNA gene	Chr3:54533230-54592839 (+)
SPRET/EiJ	ENSMSPG00010007543	lncRNA gene	Chr3:55371900-55431127 (+)
WSB/EiJ	ENSIUOG00005009165	lncRNA gene	Chr3:54981408-55031980 (+)

Homology

• Gene Tree
  4921539H07Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  2
• Radiation induced
  1
• Genomic Mutations
  1 involving 4921539H07Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000104586 (Evidence)
• NCBI Gene
  78256

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104586	Ensembl Gene Model | MGI Sequence Detail	50668	C57BL/6J
transcript	ENSMUST00000197200	Ensembl | MGI Sequence Detail	3118	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3780837

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for 4921539H07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29197	Chr3:58024536-58024550 (+)	69 bp