5330439M10Rik Gene Detail

Summary

• Symbol
  5330439M10Rik
• Name
  RIKEN cDNA 5330439M10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925487
  NCBI Gene: 78237
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:117948307-117960009 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  687 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925487	lncRNA gene	Chr10:117948307-117960009 (+)
129S1/SvImJ	ENSMUSG00200027477	lncRNA gene	Chr10:114341088-114352701 (+)
A/J	ENSMUSG00195023224	lncRNA gene	Chr10:114803671-114815250 (+)
AKR/J	ENSMUSG00220015264	lncRNA gene	Chr10:114367382-114378961 (+)
BALB/cJ	ENSMUSG00180017006	lncRNA gene	Chr10:114820515-114832093 (+)
C3H/HeJ	ENSMUSG00175026133	lncRNA gene	Chr10:114745841-114757452 (+)
C57BL/6NJ	ENSMUSG00215023920	lncRNA gene	Chr10:114451947-114463524 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034572	lncRNA gene	Chr10:113739205-113750910 (+)
CBA/J	ENSMUSG00210021728	lncRNA gene	Chr10:114595455-114607064 (+)
DBA/2J	ENSMUSG00185009368	lncRNA gene	Chr10:114738336-114749912 (+)
FVB/NJ	ENSMUSG00205030587	lncRNA gene	Chr10:114054621-114066200 (+)
JF1/MsJ	ENSUMUG00000027459	lncRNA gene	Chr10:116006036-116017653 (+)
LP/J	ENSMUSG00230025476	lncRNA gene	Chr10:116668418-116680031 (+)
NOD/ShiLtJ	ENSMUSG00190019388	lncRNA gene	Chr10:114864993-114876569 (+)
NZO/HlLtJ	ENSMUSG00225019062	lncRNA gene	Chr10:120912911-120924275 (+)
PWK/PhJ	ENSLUMG00010013990	lncRNA gene	Chr10:114395226-114406879 (+)
SPRET/EiJ	ENSMSPG00010016956	lncRNA gene	Chr10:116207984-116219794 (+)
WSB/EiJ	ENSIUOG00005014783	lncRNA gene	Chr10:114440534-114452041 (+)

Homology

• Gene Tree
  5330439M10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 5330439M10Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000112470 (Evidence)
• NCBI Gene
  78237

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112470	Ensembl Gene Model | MGI Sequence Detail	11703	C57BL/6J
transcript	ENSMUST00000370844	Ensembl | MGI Sequence Detail	747	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 5330439M10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95937	Chr10:117948419-117948436 (+)	121 bp