4930596I21Rik Gene Detail

Summary

• Symbol
  4930596I21Rik
• Name
  RIKEN cDNA 4930596I21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925479
  NCBI Gene: 78229
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:138905395-138906984 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 60.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925479	lncRNA gene	Chr1:138905363-138906988 (+)
129S1/SvImJ	ENSMUSG00200008843	lncRNA gene	Chr1:136537729-136539319 (+)
A/J	ENSMUSG00195017297	lncRNA gene	Chr1:135618083-135619662 (+)
AKR/J	ENSMUSG00220003729	lncRNA gene	Chr1:135491244-135492834 (+)
BALB/cJ	ENSMUSG00180011632	lncRNA gene	Chr1:136135246-136136836 (+)
C3H/HeJ	ENSMUSG00175006819	lncRNA gene	Chr1:135830766-135832345 (+)
C57BL/6NJ	ENSMUSG00215025396	lncRNA gene	Chr1:135837329-135838919 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034428	sense intronic lncRNA gene	Chr1:130528478-130529904 (+)
CAST/EiJ	ENSTCUG00005013416	lncRNA gene	Chr1:134753237-134754838 (+)
CBA/J	ENSMUSG00210014431	lncRNA gene	Chr1:135781591-135783170 (+)
DBA/2J	ENSMUSG00185033564	lncRNA gene	Chr1:140154671-140156250 (+)
FVB/NJ	ENSMUSG00205002621	lncRNA gene	Chr1:135136970-135138549 (+)
JF1/MsJ	ENSUMUG00000050628	lncRNA gene	Chr1:139231650-139233248 (+)
LP/J	ENSMUSG00230040779	lncRNA gene	Chr1:139669376-139670966 (+)
NOD/ShiLtJ	ENSMUSG00190003091	lncRNA gene	Chr1:135770045-135771635 (+)
NZO/HlLtJ	ENSMUSG00225000143	lncRNA gene	Chr1:143443955-143445545 (+)
PWK/PhJ	ENSLUMG00010002030	lncRNA gene	Chr1:134850202-134851803 (+)
SPRET/EiJ	ENSMSPG00010012633	lncRNA gene	Chr1:137739780-137741382 (+)
WSB/EiJ	ENSIUOG00005030206	lncRNA gene	Chr1:135569901-135571480 (+)

Homology

• Gene Tree
  4930596I21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving 4930596I21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000104900 (Evidence)
• NCBI Gene
  78229

Representative Sequences			Length	Strain/Species
genomic	78229	NCBI Gene Model | MGI Sequence Detail	1590	C57BL/6J
transcript	NR_108103	RefSeq | MGI Sequence Detail	460	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573