4930594M22Rik Gene Detail

Summary

• Symbol
  4930594M22Rik
• Name
  RIKEN cDNA 4930594M22 gene
• Synonyms
  F930011C10Rik, Gm15735

• Feature Type
  lncRNA gene
• IDs
  MGI:1925478
  NCBI Gene: 105245866
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:123150442-123166854 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 66.04 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  413 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925478	lncRNA gene	Chr14:123150405-123178533 (+)
129S1/SvImJ	ENSMUSG00200024908	lncRNA gene	Chr14:112072161-112096613 (+)
129S1/SvImJ	ENSMUSG00200024586	protein coding gene	Chr14:112072117-112086823 (+)
A/J	ENSMUSG00195030296	protein coding gene	Chr14:111802219-111816915 (+)
A/J	ENSMUSG00195032771	lncRNA gene	Chr14:111802263-111826703 (+)
AKR/J	ENSMUSG00220007949	lncRNA gene	Chr14:111617702-111642140 (+)
AKR/J	ENSMUSG00220007755	protein coding gene	Chr14:111617658-111632354 (+)
BALB/cJ	ENSMUSG00180027620	protein coding gene	Chr14:111293948-111308648 (+)
BALB/cJ	ENSMUSG00180028826	lncRNA gene	Chr14:111293992-111318436 (+)
C3H/HeJ	ENSMUSG00175002014	lncRNA gene	Chr14:113212833-113237268 (+)
C3H/HeJ	ENSMUSG00175001960	protein coding gene	Chr14:113212789-113227482 (+)
C57BL/6NJ	ENSMUSG00215023624	lncRNA gene	Chr14:111418641-111443080 (+)
C57BL/6NJ	ENSMUSG00215021489	protein coding gene	Chr14:111418597-111433294 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013422	unclassified non-coding RNA gene	Chr14:111970586-111997131 (+)
CAST/EiJ	ENSTCUG00005007291	lncRNA gene	Chr14:112809020-112833497 (+)
CBA/J	ENSMUSG00210026494	protein coding gene	Chr14:112179055-112193751 (+)
CBA/J	ENSMUSG00210027580	lncRNA gene	Chr14:112179099-112203537 (+)
DBA/2J	ENSMUSG00185014118	lncRNA gene	Chr14:117319657-117344098 (+)
DBA/2J	ENSMUSG00185013810	protein coding gene	Chr14:117319613-117334310 (+)
FVB/NJ	ENSMUSG00205008341	lncRNA gene	Chr14:110901382-110925843 (+)
FVB/NJ	ENSMUSG00205006983	protein coding gene	Chr14:110901338-110916048 (+)
JF1/MsJ	ENSUMUG00000032498	lncRNA gene	Chr14:128299436-128323590 (+)
LP/J	ENSMUSG00230012886	lncRNA gene	Chr14:129290945-129315380 (+)
LP/J	ENSMUSG00230011353	protein coding gene	Chr14:129290901-129305594 (+)
NOD/ShiLtJ	ENSMUSG00190024486	protein coding gene	Chr14:112020823-112035519 (+)
NOD/ShiLtJ	ENSMUSG00190025737	lncRNA gene	Chr14:112020867-112045305 (+)
NZO/HlLtJ	ENSMUSG00225029305	lncRNA gene	Chr14:119358489-119382967 (+)
NZO/HlLtJ	ENSMUSG00225029203	protein coding gene	Chr14:119358445-119373145 (+)
PWK/PhJ	ENSLUMG00010031085	lncRNA gene	Chr14:111243289-111268194 (+)
SPRET/EiJ	ENSMSPG00010014739	lncRNA gene	Chr14:115544079-115568580 (+)
WSB/EiJ	ENSIUOG00005032131	lncRNA gene	Chr14:111204259-111228697 (+)

Homology

• Gene Tree
  4930594M22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000075463 (Evidence)
• NCBI Gene
  105245866

Representative Sequences			Length	Strain/Species
genomic	105245866	NCBI Gene Model | MGI Sequence Detail	16413	C57BL/6J
transcript	NR_155286	RefSeq | MGI Sequence Detail	3632	ZRU/MplStud
polypeptide	Q3TZ26	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3605625, MGI:3783177

References

• Summaries
  All 19

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930594M22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127369	Chr14:123150397-123150426 (+)	-30 bp
Tssr127370	Chr14:123150430-123150463 (+)	5 bp
Tssr127371	Chr14:123150481-123150494 (+)	46 bp
Tssr127372	Chr14:123150604-123150630 (+)	175 bp