Rbm46os Gene Detail

Summary

• Symbol
  Rbm46os
• Name
  RNA binding motif protein 46, opposite strand
• Synonyms
  4930444E23Rik, 4930564K09Rik, Lratos

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1925462
  NCBI Gene: 78212
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:82784012-82850945 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 36.79 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1931 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925462	antisense lncRNA gene	Chr3:82783533-82904667 (+)
129S1/SvImJ	ENSMUSG00200019200	lncRNA gene	Chr3:79623817-79690664 (+)
A/J	ENSMUSG00195011950	lncRNA gene	Chr3:79639999-79706852 (+)
AKR/J	ENSMUSG00220001484	lncRNA gene	Chr3:79600126-79666938 (+)
BALB/cJ	ENSMUSG00180001970	lncRNA gene	Chr3:79772917-79839732 (+)
C3H/HeJ	ENSMUSG00175007488	lncRNA gene	Chr3:79566648-79633485 (+)
C57BL/6NJ	ENSMUSG00215002165	lncRNA gene	Chr3:80024081-80091029 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003381	antisense lncRNA gene	Chr3:75701106-75766149 (+)
CAST/EiJ	ENSTCUG00005002025	lncRNA gene	Chr3:79123288-79191085 (+)
CBA/J	ENSMUSG00210025815	lncRNA gene	Chr3:79711360-79778207 (+)
DBA/2J	ENSMUSG00185012803	lncRNA gene	Chr3:79857588-79924395 (+)
FVB/NJ	ENSMUSG00205006450	lncRNA gene	Chr3:78634056-78701002 (+)
JF1/MsJ	ENSUMUG00000002312	lncRNA gene	Chr3:79432738-79500121 (+)
LP/J	ENSMUSG00230036817	lncRNA gene	Chr3:81832349-81899184 (+)
NOD/ShiLtJ	ENSMUSG00190002747	lncRNA gene	Chr3:80079496-80146437 (+)
NZO/HlLtJ	ENSMUSG00225007839	lncRNA gene	Chr3:84569514-84636483 (+)
PWK/PhJ	ENSLUMG00010006678	lncRNA gene	Chr3:79482125-79549465 (+)
SPRET/EiJ	ENSMSPG00010017671	lncRNA gene	Chr3:80261478-80326570 (+)
WSB/EiJ	ENSIUOG00005003109	lncRNA gene	Chr3:80057659-80124582 (+)

Homology

• Gene Tree
  Rbm46os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rbm46os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  2

• Ensembl
  ENSMUSG00000086273 (Evidence)
• NCBI Gene
  78212

Representative Sequences			Length	Strain/Species
genomic	78212	NCBI Gene Model | MGI Sequence Detail	66934	C57BL/6J
transcript	NR_040381	RefSeq | MGI Sequence Detail	3261	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1921208

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rbm46os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29638	Chr3:82784003-82784014 (+)	-3 bp