4930512P04Rik Gene Detail

Summary

• Symbol
  4930512P04Rik
• Name
  RIKEN cDNA 4930512P04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925434
  NCBI Gene: 78184
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:116457381-116457804 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925434	lncRNA gene	Chr3:116457381-116457804 (+)
129S1/SvImJ	ENSMUSG00200026584	lncRNA gene	Chr3:113115246-113115669 (+)
A/J	ENSMUSG00195016493	lncRNA gene	Chr3:113364609-113365032 (+)
AKR/J	ENSMUSG00220026833	lncRNA gene	Chr3:111771819-111772242 (+)
BALB/cJ	ENSMUSG00180029938	lncRNA gene	Chr3:113309372-113309795 (+)
C3H/HeJ	ENSMUSG00175027481	lncRNA gene	Chr3:112849902-112850325 (+)
C57BL/6NJ	ENSMUSG00215007377	lncRNA gene	Chr3:113582799-113583222 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005712	lincRNA gene	Chr3:110379898-110380315 (+)
CAST/EiJ	ENSTCUG00005032310	lncRNA gene	Chr3:113861772-113862195 (+)
CBA/J	ENSMUSG00210002919	lncRNA gene	Chr3:113458598-113459021 (+)
DBA/2J	ENSMUSG00185008131	lncRNA gene	Chr3:114048548-114048971 (+)
FVB/NJ	ENSMUSG00205033853	lncRNA gene	Chr3:112397466-112397889 (+)
JF1/MsJ	ENSUMUG00000003687	lncRNA gene	Chr3:112949573-112949996 (+)
LP/J	ENSMUSG00230012596	lncRNA gene	Chr3:115976071-115976494 (+)
NOD/ShiLtJ	ENSMUSG00190032464	lncRNA gene	Chr3:114412449-114412872 (+)
NZO/HlLtJ	ENSMUSG00225004015	lncRNA gene	Chr3:118470970-118471393 (+)
PWK/PhJ	ENSLUMG00010009352	lncRNA gene	Chr3:112834248-112834671 (+)
SPRET/EiJ	ENSMSPG00010032517	lncRNA gene	Chr3:113468086-113468509 (+)
WSB/EiJ	ENSIUOG00005006977	lncRNA gene	Chr3:113627787-113628210 (+)

Homology

• Gene Tree
  4930512P04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930512P04Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000106125 (Evidence)
• NCBI Gene
  78184

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106125	Ensembl Gene Model | MGI Sequence Detail	424	C57BL/6J
transcript	ENSMUST00000197000	Ensembl | MGI Sequence Detail	424	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930512P04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31364	Chr3:116455410-116455424 (+)	-1,964 bp