4930486F22Rik Gene Detail

Summary

• Symbol
  4930486F22Rik
• Name
  RIKEN cDNA 4930486F22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925420
  NCBI Gene: 78170
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:85931718-85949450 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 42.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  474 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925420	lncRNA gene	Chr10:85931175-85950523 (+)
129S1/SvImJ	ENSMUSG00200029780	lncRNA gene	Chr10:82428690-82446033 (+)
A/J	ENSMUSG00195022074	lncRNA gene	Chr10:82875904-82893260 (+)
AKR/J	ENSMUSG00220022137	lncRNA gene	Chr10:82478209-82495558 (+)
BALB/cJ	ENSMUSG00180035331	lncRNA gene	Chr10:82879017-82896364 (+)
C3H/HeJ	ENSMUSG00175024541	lncRNA gene	Chr10:82754842-82772174 (+)
C57BL/6NJ	ENSMUSG00215033460	lncRNA gene	Chr10:82423330-82440669 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037946	lncRNA gene	Chr10:82181910-82199757 (+)
CBA/J	ENSMUSG00210036715	lncRNA gene	Chr10:82605589-82622935 (+)
DBA/2J	ENSMUSG00185043129	lncRNA gene	Chr10:82819127-82836522 (+)
FVB/NJ	ENSMUSG00205022612	lncRNA gene	Chr10:82482744-82500078 (+)
JF1/MsJ	ENSUMUG00000028587	lncRNA gene	Chr10:84184809-84202789 (+)
LP/J	ENSMUSG00230018248	lncRNA gene	Chr10:84711837-84729221 (+)
NOD/ShiLtJ	ENSMUSG00190019327	lncRNA gene	Chr10:82861529-82878867 (+)
NZO/HlLtJ	ENSMUSG00225053546	lncRNA gene	Chr10:88984815-89002149 (+)
PWK/PhJ	ENSLUMG00010023488	lncRNA gene	Chr10:82464259-82482055 (+)
SPRET/EiJ	ENSMSPG00010035611	lncRNA gene	Chr10:83918744-83941938 (+)
WSB/EiJ	ENSIUOG00005037850	lncRNA gene	Chr10:82559074-82576473 (+)

Homology

• Gene Tree
  4930486F22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930486F22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000112493 (Evidence)
• NCBI Gene
  78170

Representative Sequences			Length	Strain/Species
genomic	78170	NCBI Gene Model | MGI Sequence Detail	17733	C57BL/6J
transcript	NR_038024	RefSeq | MGI Sequence Detail	564	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for 4930486F22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94954	Chr10:85931700-85931724 (+)	-6 bp