4930430O22Rik Gene Detail

Summary

• Symbol
  4930430O22Rik
• Name
  RIKEN cDNA 4930430O22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925404
  NCBI Gene: 78154
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:115574125-115574703 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.10 cM, cytoband F
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925404	lncRNA gene	Chr5:115574125-115574703 (-)
129S1/SvImJ	ENSMUSG00200023789	lncRNA gene	Chr5:109313486-109314064 (-)
A/J	ENSMUSG00195040239	lncRNA gene	Chr5:108835318-108835896 (-)
AKR/J	ENSMUSG00220052405	lncRNA gene	Chr5:108342888-108343466 (-)
BALB/cJ	ENSMUSG00180048531	lncRNA gene	Chr5:108964222-108964800 (-)
C3H/HeJ	ENSMUSG00175049517	lncRNA gene	Chr5:110951977-110952555 (-)
C57BL/6NJ	ENSMUSG00215039481	lncRNA gene	Chr5:108975105-108975683 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003742	antisense lncRNA gene	Chr5:108378587-108379165 (-)
CAST/EiJ	ENSTCUG00005033322	lncRNA gene	Chr5:108152239-108152817 (-)
CBA/J	ENSMUSG00210047145	lncRNA gene	Chr5:109703362-109703940 (-)
DBA/2J	ENSMUSG00185054560	lncRNA gene	Chr5:112762249-112762827 (-)
FVB/NJ	ENSMUSG00205052670	lncRNA gene	Chr5:108602359-108602937 (-)
JF1/MsJ	ENSUMUG00000054989	lncRNA gene	Chr5:115582423-115583001 (-)
LP/J	ENSMUSG00230048801	lncRNA gene	Chr5:116851652-116852230 (-)
NOD/ShiLtJ	ENSMUSG00190048743	lncRNA gene	Chr5:108640847-108641425 (-)
NZO/HlLtJ	ENSMUSG00225017362	lncRNA gene	Chr5:124511653-124512231 (-)
PWK/PhJ	ENSLUMG00010042435	lncRNA gene	Chr5:107482159-107482737 (-)
SPRET/EiJ	ENSMSPG00010045921	lncRNA gene	Chr5:110763529-110764094 (-)
WSB/EiJ	ENSIUOG00005044296	lncRNA gene	Chr5:111344279-111344857 (-)

Homology

• Gene Tree
  4930430O22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930430O22Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000107353 (Evidence)
• NCBI Gene
  78154

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107353	Ensembl Gene Model | MGI Sequence Detail	579	C57BL/6J
transcript	ENSMUST00000202548	Ensembl | MGI Sequence Detail	579	Not Applicable
polypeptide	Q9D2I7	UniProt | EBI | MGI Sequence Detail	154	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930430O22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52798	Chr5:115574567-115574590 (-)	124 bp