4930425L21Rik Gene Detail

Summary

• Symbol
  4930425L21Rik
• Name
  RIKEN cDNA 4930425L21 gene
• Synonyms
  4930473P14Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1925379
  NCBI Gene: 75024
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:135635911-135660389 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  832 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925379	lncRNA gene	Chr6:135503571-135661572 (+)
129S1/SvImJ	ENSMUSG00200034413	lncRNA gene	Chr6:133123721-133146854 (+)
A/J	ENSMUSG00195034403	lncRNA gene	Chr6:131976939-132000001 (+)
AKR/J	ENSMUSG00220043844	lncRNA gene	Chr6:130201379-130224433 (+)
BALB/cJ	ENSMUSG00180039391	lncRNA gene	Chr6:132069312-132092586 (+)
C3H/HeJ	ENSMUSG00175035182	lncRNA gene	Chr6:131997211-132020265 (+)
C57BL/6NJ	ENSMUSG00215037753	lncRNA gene	Chr6:132258890-132284488 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006445	lincRNA gene	Chr6:133643435-133667895 (+)
CAST/EiJ	ENSTCUG00005036789	lncRNA gene	Chr6:132935489-132960823 (+)
CBA/J	ENSMUSG00210016883	lncRNA gene	Chr6:132015608-132038664 (+)
DBA/2J	ENSMUSG00185023702	lncRNA gene	Chr6:132711866-132734924 (+)
FVB/NJ	ENSMUSG00205038194	lncRNA gene	Chr6:131150699-131173872 (+)
JF1/MsJ	ENSUMUG00000044034	lncRNA gene	Chr6:131475316-131500928 (+)
LP/J	ENSMUSG00230009707	lncRNA gene	Chr6:133919465-133942594 (+)
NOD/ShiLtJ	ENSMUSG00190007097	lncRNA gene	Chr6:132550091-132573149 (+)
NZO/HlLtJ	ENSMUSG00225007619	lncRNA gene	Chr6:136783950-136809556 (+)
PWK/PhJ	ENSLUMG00010044373	lncRNA gene	Chr6:130528468-130553961 (+)
SPRET/EiJ	ENSMSPG00010035406	lncRNA gene	Chr6:134329311-134354919 (+)
WSB/EiJ	ENSIUOG00005046547	lncRNA gene	Chr6:132826347-132849512 (+)

Homology

• Gene Tree
  4930425L21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  1

• Ensembl
  ENSMUSG00000107396 (Evidence)
• NCBI Gene
  75024

Representative Sequences			Length	Strain/Species
genomic	75024	NCBI Gene Model | MGI Sequence Detail	24479	C57BL/6J
transcript	NR_126088	RefSeq | MGI Sequence Detail	871	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:1922274

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573