Lrp8os1 Gene Detail

Summary

• Symbol
  Lrp8os1
• Name
  low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1
• Synonyms
  4930430J20Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1925359
  NCBI Gene: 78109
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:107685089-107688101 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.18 cM, cytoband C7
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925359	antisense lncRNA gene	Chr4:107685089-107688101 (-)
129S1/SvImJ	ENSMUSG00200050298	lncRNA gene	Chr4:102736466-102739414 (-)
A/J	ENSMUSG00195048200	lncRNA gene	Chr4:103279390-103282338 (-)
AKR/J	ENSMUSG00220012345	lncRNA gene	Chr4:102680126-102683074 (-)
BALB/cJ	ENSMUSG00180046761	lncRNA gene	Chr4:102116739-102119687 (-)
C3H/HeJ	ENSMUSG00175041600	lncRNA gene	Chr4:103121201-103124149 (-)
C57BL/6NJ	ENSMUSG00215033342	lncRNA gene	Chr4:103017225-103020173 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003536	antisense lncRNA gene	Chr4:99939759-99942694 (-)
CAST/EiJ	ENSTCUG00005022332	lncRNA gene	Chr4:102230700-102231316 (-)
CBA/J	ENSMUSG00210053249	lncRNA gene	Chr4:102754260-102757208 (-)
DBA/2J	ENSMUSG00185050158	lncRNA gene	Chr4:103465067-103468015 (-)
FVB/NJ	ENSMUSG00205016563	lncRNA gene	Chr4:101691050-101693998 (-)
JF1/MsJ	ENSUMUG00000050642	lncRNA gene	Chr4:103477599-103480551 (-)
LP/J	ENSMUSG00230009289	lncRNA gene	Chr4:106772909-106775857 (-)
NOD/ShiLtJ	ENSMUSG00190047050	lncRNA gene	Chr4:102124022-102126970 (-)
NZO/HlLtJ	ENSMUSG00225032829	lncRNA gene	Chr4:111883626-111886574 (-)
PWK/PhJ	ENSLUMG00010048728	lncRNA gene	Chr4:101195979-101198931 (-)
SPRET/EiJ	ENSMSPG00010029157	lncRNA gene	Chr4:103433865-103436794 (-)
WSB/EiJ	ENSIUOG00005043585	lncRNA gene	Chr4:102331091-102334039 (-)

Homology

• Gene Tree
  Lrp8os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Lrp8os1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• UniProt
  1

• Ensembl
  ENSMUSG00000028612 (Evidence)
• NCBI Gene
  78109

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000028612	Ensembl Gene Model | MGI Sequence Detail	3013	C57BL/6J
transcript	ENSMUST00000326334	Ensembl | MGI Sequence Detail	860	Not Applicable
polypeptide	Q9D2I8	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12