Particl Gene Detail

Summary

• Symbol
  Particl
• Name
  promoter of Mat2a antisense radiation induced circulating long non-coding RNA
• Synonyms
  4930414L22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1925358
  NCBI Gene: 78108
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:72416034-72417593 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925358	lncRNA gene	Chr6:72415666-72417598 (+)
129S1/SvImJ	ENSMUSG00200012628	unclassified gene	Chr6:69320100-69321659 (+)
A/J	ENSMUSG00195046715	unclassified gene	Chr6:69082313-69083873 (+)
AKR/J	ENSMUSG00220046181	unclassified gene	Chr6:68056686-68058249 (+)
BALB/cJ	ENSMUSG00180039159	unclassified gene	Chr6:69437281-69438840 (+)
C3H/HeJ	ENSMUSG00175013020	unclassified gene	Chr6:107981901-107983461 (-)
C57BL/6NJ	ENSMUSG00215043341	unclassified gene	Chr6:69409976-69411535 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001696	unclassified gene	Chr6:69308229-69309780 (+)
CAST/EiJ	ENSTCUG00005038864	unclassified gene	Chr6:69567755-69569314 (+)
CBA/J	ENSMUSG00210046595	unclassified gene	Chr6:69267275-69268835 (+)
DBA/2J	ENSMUSG00185047730	unclassified gene	Chr6:69827408-69828968 (+)
FVB/NJ	ENSMUSG00205039803	unclassified gene	Chr6:68532805-68534364 (+)
JF1/MsJ	ENSUMUG00000043542	unclassified gene	Chr6:68876367-68877931 (+)
LP/J	ENSMUSG00230024806	unclassified gene	Chr6:70915130-70916689 (+)
NOD/ShiLtJ	ENSMUSG00190043308	unclassified gene	Chr6:68795879-68797442 (+)
NZO/HlLtJ	ENSMUSG00225006868	unclassified gene	Chr6:72888979-72890538 (+)
PWK/PhJ	ENSLUMG00010024827	unclassified gene	Chr6:68286955-68288517 (+)
SPRET/EiJ	ENSMSPG00010028558	unclassified gene	Chr6:70112949-70114503 (+)
WSB/EiJ	ENSIUOG00005025761	unclassified gene	Chr6:69820140-69821699 (+)

Homology

• Gene Tree
  Particl
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Particl
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  24

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000108591 (Evidence)
• NCBI Gene
  78108

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108591	Ensembl Gene Model | MGI Sequence Detail	1560	C57BL/6J
transcript	NR_046011	RefSeq | MGI Sequence Detail	1933	ZRU/MplStud

Molecular
Reagents

• All nucleic 24

  cDNA 24

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2141416

References

• Summaries
  All 24

  Phenotypes 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for Particl:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57134	Chr6:72416017-72416048 (+)	-1 bp