5330429C05Rik Gene Detail

Summary

• Symbol
  5330429C05Rik
• Name
  RIKEN cDNA 5330429C05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925321
  NCBI Gene: 78071
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:55061048-55062288 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 29.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925321	lncRNA gene	Chr13:55060985-55075223 (+)
129S1/SvImJ	ENSMUSG00200017036	lncRNA gene	Chr13:51932966-51934209 (+)
A/J	ENSMUSG00195046490	lncRNA gene	Chr13:51398650-51399894 (+)
AKR/J	ENSMUSG00220044127	lncRNA gene	Chr13:50942732-50943975 (+)
BALB/cJ	ENSMUSG00180016752	lncRNA gene	Chr13:51649927-51651171 (+)
C3H/HeJ	ENSMUSG00175045671	lncRNA gene	Chr13:51436406-51437650 (+)
C57BL/6NJ	ENSMUSG00215041441	lncRNA gene	Chr13:51462557-51463801 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004967	lincRNA gene	Chr13:50327686-50328947 (+)
CAST/EiJ	ENSTCUG00005040735	lncRNA gene	Chr13:51855244-51856488 (+)
CBA/J	ENSMUSG00210040819	lncRNA gene	Chr13:51641229-51642473 (+)
DBA/2J	ENSMUSG00185017078	lncRNA gene	Chr13:52484277-52485520 (+)
FVB/NJ	ENSMUSG00205046221	lncRNA gene	Chr13:51289487-51290730 (+)
JF1/MsJ	ENSUMUG00000039321	lncRNA gene	Chr13:51880312-51881557 (+)
LP/J	ENSMUSG00230035275	lncRNA gene	Chr13:61828760-61830003 (+)
NOD/ShiLtJ	ENSMUSG00190039957	lncRNA gene	Chr13:51529723-51530966 (+)
NZO/HlLtJ	ENSMUSG00225035244	lncRNA gene	Chr13:55556088-55557331 (+)
PWK/PhJ	ENSLUMG00010023131	lncRNA gene	Chr13:50755583-50756780 (+)
SPRET/EiJ	ENSMSPG00010042080	lncRNA gene	Chr13:51172252-51173504 (+)
WSB/EiJ	ENSIUOG00005026269	lncRNA gene	Chr13:50960330-50961573 (+)

Homology

• Gene Tree
  5330429C05Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  2 involving 5330429C05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000085896 (Evidence)
• NCBI Gene
  78071

Representative Sequences			Length	Strain/Species
genomic	78071	NCBI Gene Model | MGI Sequence Detail	1241	C57BL/6J
transcript	NR_167691	RefSeq | MGI Sequence Detail	483	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:190741 Migdalska AM, et al., Generation of the Sotos syndrome deletion in mice. Mamm Genome. 2012 Dec;23(11-12):749-57

TSS for 5330429C05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119904	Chr13:55061039-55061040 (+)	-8 bp
Tssr119905	Chr13:55061042-55061053 (+)	0 bp
Tssr119906	Chr13:55061062-55061063 (+)	15 bp