4930567K20Rik Gene Detail

Summary

• Symbol
  4930567K20Rik
• Name
  RIKEN cDNA 4930567K20 gene
• Synonyms
  1700038H22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1925306
  NCBI Gene: 78056
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:10626790-10633875 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  306 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925306	lncRNA gene	Chr10:10624627-10654119 (+)
129S1/SvImJ	ENSMUSG00200010611	lncRNA gene	Chr10:7634553-7663959 (+)
A/J	ENSMUSG00195010414	lncRNA gene	Chr10:7527533-7556903 (+)
AKR/J	ENSMUSG00220007845	lncRNA gene	Chr10:7649725-7679094 (+)
BALB/cJ	ENSMUSG00180025996	lncRNA gene	Chr10:7689500-7718867 (+)
C3H/HeJ	ENSMUSG00175013459	lncRNA gene	Chr10:7680248-7709619 (+)
C57BL/6NJ	ENSMUSG00215005617	lncRNA gene	Chr10:7568561-7598002 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018123	lncRNA gene	Chr10:7626888-7656313 (+)
CBA/J	ENSMUSG00210012679	lncRNA gene	Chr10:7625885-7655256 (+)
DBA/2J	ENSMUSG00185010866	lncRNA gene	Chr10:7668602-7698005 (+)
FVB/NJ	ENSMUSG00205008862	lncRNA gene	Chr10:7648654-7678079 (+)
JF1/MsJ	ENSUMUG00000039476	lncRNA gene	Chr10:7717602-7746915 (+)
LP/J	ENSMUSG00230017731	lncRNA gene	Chr10:9288870-9318238 (+)
NOD/ShiLtJ	ENSMUSG00190025912	lncRNA gene	Chr10:7635998-7665387 (+)
NZO/HlLtJ	ENSMUSG00225016972	lncRNA gene	Chr10:13817204-13846607 (+)
PWK/PhJ	ENSLUMG00010021208	lncRNA gene	Chr10:7460308-7489664 (+)
SPRET/EiJ	ENSMSPG00010007223	lncRNA gene	Chr10:7809043-7841943 (+)
WSB/EiJ	ENSIUOG00005014475	lncRNA gene	Chr10:7563998-7593398 (+)

Homology

• Gene Tree
  4930567K20Rik
  

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000112730 (Evidence)
• NCBI Gene
  78056

Representative Sequences			Length	Strain/Species
genomic	78056	NCBI Gene Model | MGI Sequence Detail	7086	C57BL/6J
transcript	NR_046010	RefSeq | MGI Sequence Detail	444	ZRU/MplStud

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1920542

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930567K20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92348	Chr10:10626817-10626856 (+)	47 bp
Tssr92349	Chr10:10626864-10626874 (+)	79 bp