4930535G08Rik Gene Detail

Summary

• Symbol
  4930535G08Rik
• Name
  RIKEN cDNA 4930535G08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925283
  NCBI Gene: 78033
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:36050111-36050980 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925283	lncRNA gene	Chr1:36050111-36050980 (+)
129S1/SvImJ	ENSMUSG00200004299	lncRNA gene	Chr1:33637501-33638323 (+)
A/J	ENSMUSG00195044974	lncRNA gene	Chr1:33252268-33253089 (+)
AKR/J	ENSMUSG00220009931	lncRNA gene	Chr1:33273927-33274749 (+)
BALB/cJ	ENSMUSG00180011992	lncRNA gene	Chr1:33382813-33383636 (+)
C3H/HeJ	ENSMUSG00175001490	lncRNA gene	Chr1:33256423-33257245 (+)
C57BL/6NJ	ENSMUSG00215033500	lncRNA gene	Chr1:33359793-33360616 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004347	lincRNA gene	Chr1:30667927-30668735 (+)
CAST/EiJ	ENSTCUG00005003047	lncRNA gene	Chr1:33422652-33423473 (+)
CBA/J	ENSMUSG00210005977	lncRNA gene	Chr1:33099245-33100066 (+)
DBA/2J	ENSMUSG00185010965	lncRNA gene	Chr1:34181241-34182064 (+)
FVB/NJ	ENSMUSG00205041005	lncRNA gene	Chr1:33278164-33278986 (+)
JF1/MsJ	ENSUMUG00000024733	lncRNA gene	Chr1:33400726-33401543 (+)
LP/J	ENSMUSG00230026162	lncRNA gene	Chr1:34258377-34259199 (+)
NOD/ShiLtJ	ENSMUSG00190037755	lncRNA gene	Chr1:33299947-33300770 (+)
NZO/HlLtJ	ENSMUSG00225014305	lncRNA gene	Chr1:37487313-37488135 (+)
PWK/PhJ	ENSLUMG00010037182	lncRNA gene	Chr1:32932516-32933334 (+)
SPRET/EiJ	ENSMSPG00010031233	lncRNA gene	Chr1:34421481-34421604 (+)
WSB/EiJ	ENSIUOG00005040211	lncRNA gene	Chr1:33241663-33242484 (+)

Homology

• Gene Tree
  4930535G08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 4930535G08Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000104201 (Evidence)
• NCBI Gene
  78033

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104201	Ensembl Gene Model | MGI Sequence Detail	870	C57BL/6J
transcript	ENSMUST00000327587	Ensembl | MGI Sequence Detail	472	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573