A930014D07Rik Gene Detail

Summary

• Symbol
  A930014D07Rik
• Name
  RIKEN cDNA A930014D07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925197
  NCBI Gene: 77947
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:99143365-99158203 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  586 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925197	lncRNA gene	Chr13:99143365-99158203 (+)
129S1/SvImJ	ENSMUSG00200009649	lncRNA gene	Chr13:93707028-93721333 (+)
A/J	ENSMUSG00195031191	lncRNA gene	Chr13:94194133-94208698 (+)
AKR/J	ENSMUSG00220028526	lncRNA gene	Chr13:92688217-92702955 (+)
BALB/cJ	ENSMUSG00180037819	lncRNA gene	Chr13:94734228-94748805 (+)
C3H/HeJ	ENSMUSG00175017769	lncRNA gene	Chr13:94901074-94915637 (+)
C57BL/6NJ	ENSMUSG00215033906	lncRNA gene	Chr13:94794611-94809214 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011780	lncRNA gene	Chr13:94007662-94022028 (+)
CBA/J	ENSMUSG00210011828	lncRNA gene	Chr13:94228758-94243493 (+)
DBA/2J	ENSMUSG00185019515	lncRNA gene	Chr13:97889548-97904282 (+)
FVB/NJ	ENSMUSG00205033325	lncRNA gene	Chr13:93682661-93697231 (+)
JF1/MsJ	ENSUMUG00000028801	lncRNA gene	Chr13:97570222-97584596 (+)
LP/J	ENSMUSG00230037571	lncRNA gene	Chr13:107892238-107906544 (+)
NOD/ShiLtJ	ENSMUSG00190045102	lncRNA gene	Chr13:94564310-94578874 (+)
NZO/HlLtJ	ENSMUSG00225033511	lncRNA gene	Chr13:100414193-100428757 (+)
PWK/PhJ	ENSLUMG00010026572	lncRNA gene	Chr13:93661234-93675557 (+)
SPRET/EiJ	ENSMSPG00010009995	lncRNA gene	Chr13:94946141-94961028 (+)
WSB/EiJ	ENSIUOG00005035599	lncRNA gene	Chr13:93565741-93580357 (+)

Homology

• Gene Tree
  A930014D07Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000114414 (Evidence)
• NCBI Gene
  77947

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114414	Ensembl Gene Model | MGI Sequence Detail	14839	C57BL/6J
transcript	ENSMUST00000223781	Ensembl | MGI Sequence Detail	974	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A930014D07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120818	Chr13:99143589-99143594 (+)	227 bp