A930006A01Rik Gene Detail

Summary

• Symbol
  A930006A01Rik
• Name
  RIKEN cDNA A930006A01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925192
  NCBI Gene: 77942
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:4855979-4874316 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  593 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925192	lncRNA gene	Chr1:4855979-4874316 (+)
129S1/SvImJ	ENSMUSG00200002764	lncRNA gene	Chr1:2267046-2268415 (+)
A/J	ENSMUSG00195002919	lncRNA gene	Chr1:2061205-2062574 (+)
AKR/J	ENSMUSG00220003658	lncRNA gene	Chr1:2163971-2165341 (+)
BALB/cJ	ENSMUSG00180009388	lncRNA gene	Chr1:2130944-2132314 (+)
C3H/HeJ	ENSMUSG00175000385	lncRNA gene	Chr1:1994826-1996190 (+)
C57BL/6NJ	ENSMUSG00215004309	lncRNA gene	Chr1:2042294-2043663 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002128	lncRNA gene	Chr1:2409198-2410562 (+)
CBA/J	ENSMUSG00210002210	lncRNA gene	Chr1:1918750-1920114 (+)
DBA/2J	ENSMUSG00185004608	lncRNA gene	Chr1:2977486-2978853 (+)
FVB/NJ	ENSMUSG00205005460	lncRNA gene	Chr1:2195580-2196950 (+)
JF1/MsJ	ENSUMUG00000004335	lncRNA gene	Chr1:2256198-2257565 (+)
LP/J	ENSMUSG00230002457	lncRNA gene	Chr1:2967401-2968770 (+)
NOD/ShiLtJ	ENSMUSG00190001581	lncRNA gene	Chr1:2059941-2061309 (+)
NZO/HlLtJ	ENSMUSG00225000235	lncRNA gene	Chr1:6335348-6336718 (+)
PWK/PhJ	ENSLUMG00010002528	lncRNA gene	Chr1:1830885-1832252 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005011505	lncRNA gene	Chr1:2049637-2051002 (+)

Homology

• Gene Tree
  A930006A01Rik
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120403 (Evidence)
• NCBI Gene
  77942

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120403	Ensembl Gene Model | MGI Sequence Detail	18338	C57BL/6J
transcript	ENSMUST00000243104	Ensembl | MGI Sequence Detail	1382	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A930006A01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5800	Chr1:4855995-4856025 (+)	31 bp