A030005L19Rik Gene Detail

Summary

• Symbol
  A030005L19Rik
• Name
  RIKEN cDNA A030005L19 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1925172
  NCBI Gene: 77922
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:82891046-82891851 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, cytoband C5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925172	protein coding gene	Chr1:82891046-82891851 (+)
129S1/SvImJ	ENSMUSG00200031862	protein coding gene	Chr1:80565100-80565905 (+)
A/J	ENSMUSG00195009393	protein coding gene	Chr1:79967611-79968416 (+)
AKR/J	ENSMUSG00220009697	protein coding gene	Chr1:80164610-80165442 (+)
BALB/cJ	ENSMUSG00180017414	protein coding gene	Chr1:80239314-80240119 (+)
C3H/HeJ	ENSMUSG00175016432	protein coding gene	Chr1:80373749-80374554 (+)
C57BL/6NJ	ENSMUSG00215018115	protein coding gene	Chr1:80287471-80288276 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028269	protein coding gene	Chr1:79960496-79961328 (+)
CBA/J	ENSMUSG00210038990	protein coding gene	Chr1:80162115-80162947 (+)
DBA/2J	ENSMUSG00185031935	protein coding gene	Chr1:81196134-81196939 (+)
FVB/NJ	ENSMUSG00205025648	protein coding gene	Chr1:79712115-79712965 (+)
JF1/MsJ	ENSUMUG00000001584	protein coding gene	Chr1:80005501-80006284 (+)
LP/J	ENSMUSG00230008312	protein coding gene	Chr1:81132289-81133094 (+)
NOD/ShiLtJ	ENSMUSG00190023011	protein coding gene	Chr1:80365660-80366492 (+)
NZO/HlLtJ	ENSMUSG00225003944	protein coding gene	Chr1:84377628-84378433 (+)
PWK/PhJ	ENSLUMG00010011683	protein coding gene	Chr1:79631149-79631932 (+)
SPRET/EiJ	ENSMSPG00010045406	protein coding gene	Chr1:81770338-81771165 (+)
WSB/EiJ	ENSIUOG00005013154	protein coding gene	Chr1:79932914-79933759 (+)

Homology

• Human Ortholog
  SCYGR1, small cysteine and glycine repeat containing 1

• Vertebrate Orthologs
  8

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SCYGR1, small cysteine and glycine repeat containing 1
  
• Synonyms
  KRTAP28-1
• Links
  HGNC:34218

  NCBI Gene ID: 112441428

  UniProt: A0A286YEY9

  
  
• Chr Location
  2q36.3; chr2:227387683-227387949 (-)  GRCh38

---

• Human Ortholog
  SCYGR2, small cysteine and glycine repeat containing 2
  
• Synonyms
  KRTAP28-2
• Links
  HGNC:34220

  NCBI Gene ID: 112441435

  UniProt: A0A286YFB4

  
  
• Chr Location
  2q36.3; chr2:227598893-227599255 (+)  GRCh38

---

• Human Ortholog
  SCYGR3, small cysteine and glycine repeat containing 3
  
• Synonyms
  KRTAP28-3
• Links
  HGNC:34222

  NCBI Gene ID: 112441429

  UniProt: A0A286YF60

  
  
• Chr Location
  2q36.3; chr2:227614538-227614840 (-)  GRCh38

---

• Human Ortholog
  SCYGR4, small cysteine and glycine repeat containing 4
  
• Synonyms
  KRTAP28-4
• Links
  HGNC:34223

  NCBI Gene ID: 112441430

  UniProt: A0A286YEV6

  
  
• Chr Location
  2q36.3; chr2:227617498-227617815 (+)  GRCh38

---

• Human Ortholog
  SCYGR6, small cysteine and glycine repeat containing 6
  
• Synonyms
  KRTAP28-6
• Links
  HGNC:34225

  NCBI Gene ID: 112441431

  UniProt: A0A286YF77

  
  
• Chr Location
  2q36.3; chr2:227724440-227724757 (-)  GRCh38

---

• Human Ortholog
  SCYGR7, small cysteine and glycine repeat containing 7
  
• Synonyms
  KRTAP28-7
• Links
  HGNC:34226

  NCBI Gene ID: 112441438

  UniProt: A0A286YF01

  
  
• Chr Location
  2q36.3; chr2:227728335-227728625 (+)  GRCh38

---

• Human Ortholog
  SCYGR8, small cysteine and glycine repeat containing 8
  
• Synonyms
  KRTAP28-8
• Links
  HGNC:34227

  NCBI Gene ID: 112441432

  UniProt: A0A286YFG1

  
  
• Chr Location
  2q36.3; chr2:227745894-227746220 (+)  GRCh38

---

• Human Ortholog
  SCYGR9, small cysteine and glycine repeat containing 9 (pseudogene)
  
• Synonyms
  KRTAP28-9, KRTAP28p1
• Links
  HGNC:34219

  NCBI Gene ID: 117134595

  UniProt: P0DSO2

  
  
• Chr Location
  2q36.3; chr2:227587237-227587515 (-)  GRCh38

---

• MGI Vertebrate Homology
  A030005L19Rik stringent orthology
  8 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SCYGR1, SCYGR2, SCYGR3, SCYGR4, SCYGR6, SCYGR7, SCYGR8, SCYGR9
• Gene Tree
  A030005L19Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000113880 (Evidence)
• NCBI Gene
  77922

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113880	Ensembl Gene Model | MGI Sequence Detail	806	C57BL/6J
transcript	ENSMUST00000220768	Ensembl | MGI Sequence Detail	806	Not Applicable
polypeptide	ENSMUSP00000152156	Ensembl | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A030005L19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7638	Chr1:82891043-82891050 (+)	1 bp