A330102I10Rik Gene Detail

Summary

• Symbol
  A330102I10Rik
• Name
  RIKEN cDNA A330102I10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925170
  NCBI Gene: 77920
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:29198397-29224319 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 12.89 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  815 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925170	lncRNA gene	Chr13:29129292-29241710 (+)
129S1/SvImJ	ENSMUSG00200031694	lncRNA gene	Chr13:26359280-26386753 (+)
A/J	ENSMUSG00195038980	lncRNA gene	Chr13:25500414-25527836 (+)
AKR/J	ENSMUSG00220013264	lncRNA gene	Chr13:25359554-25386962 (+)
BALB/cJ	ENSMUSG00180026405	lncRNA gene	Chr13:25805932-25833349 (+)
C3H/HeJ	ENSMUSG00175034107	lncRNA gene	Chr13:25828577-25855985 (+)
C57BL/6NJ	ENSMUSG00215013182	lncRNA gene	Chr13:25964437-25991846 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004933	lincRNA gene	Chr13:24602756-24626755 (+)
CAST/EiJ	ENSTCUG00005011258	lncRNA gene	Chr13:26007675-26036384 (+)
CBA/J	ENSMUSG00210028289	lncRNA gene	Chr13:25772196-25799611 (+)
DBA/2J	ENSMUSG00185021840	lncRNA gene	Chr13:26591271-26618681 (+)
FVB/NJ	ENSMUSG00205036093	lncRNA gene	Chr13:25588490-25615898 (+)
JF1/MsJ	ENSUMUG00000016467	lncRNA gene	Chr13:26240137-26268874 (+)
LP/J	ENSMUSG00230021624	lncRNA gene	Chr13:35915968-35943373 (+)
NOD/ShiLtJ	ENSMUSG00190038378	lncRNA gene	Chr13:25966217-25993624 (+)
NZO/HlLtJ	ENSMUSG00225046231	lncRNA gene	Chr13:29698869-29726276 (+)
PWK/PhJ	ENSLUMG00010032254	lncRNA gene	Chr13:25046907-25075561 (+)
SPRET/EiJ	ENSMSPG00010027883	lncRNA gene	Chr13:25090421-25118042 (+)
WSB/EiJ	ENSIUOG00005017215	lncRNA gene	Chr13:25171918-25200238 (+)

Homology

• Gene Tree
  A330102I10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving A330102I10Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  193
• RefSeq
  4

• Ensembl
  ENSMUSG00000086363 (Evidence)
• NCBI Gene
  77920

Representative Sequences			Length	Strain/Species
genomic	77920	NCBI Gene Model | MGI Sequence Detail	25923	C57BL/6J
transcript	NR_045073	RefSeq | MGI Sequence Detail	887	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for A330102I10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119063	Chr13:29198288-29198307 (+)	-99 bp
Tssr119064	Chr13:29198389-29198394 (+)	-5 bp
Tssr119065	Chr13:29200250-29200286 (+)	1,871 bp