A030014E15Rik Gene Detail

Summary

• Symbol
  A030014E15Rik
• Name
  RIKEN cDNA A030014E15 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1925167
  NCBI Gene: 77917
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:82902638-82903433 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925167	protein coding gene	Chr1:82902638-82903433 (+)
129S1/SvImJ	ENSMUSG00200031877	protein coding gene	Chr1:80576694-80577489 (+)
A/J	ENSMUSG00195009405	protein coding gene	Chr1:79979205-79980000 (+)
AKR/J	ENSMUSG00220009703	protein coding gene	Chr1:80176223-80177018 (+)
BALB/cJ	ENSMUSG00180017430	protein coding gene	Chr1:80250906-80251701 (+)
C3H/HeJ	ENSMUSG00175016438	protein coding gene	Chr1:80385343-80386138 (+)
C57BL/6NJ	ENSMUSG00215018161	protein coding gene	Chr1:80299064-80299859 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028273	protein coding gene	Chr1:79972092-79972902 (+)
CBA/J	ENSMUSG00210039026	protein coding gene	Chr1:80173726-80174521 (+)
DBA/2J	ENSMUSG00185031946	protein coding gene	Chr1:81207725-81208520 (+)
FVB/NJ	ENSMUSG00205025686	protein coding gene	Chr1:79723752-79724547 (+)
JF1/MsJ	ENSUMUG00000001781	protein coding gene	Chr1:80017671-80018496 (+)
LP/J	ENSMUSG00230008330	protein coding gene	Chr1:81143881-81144676 (+)
NOD/ShiLtJ	ENSMUSG00190023028	protein coding gene	Chr1:80377273-80378068 (+)
NZO/HlLtJ	ENSMUSG00225003949	protein coding gene	Chr1:84389220-84390015 (+)
PWK/PhJ	ENSLUMG00010011693	protein coding gene	Chr1:79643324-79644143 (+)
SPRET/EiJ	ENSMSPG00010045422	protein coding gene	Chr1:81781932-81782740 (+)
WSB/EiJ	ENSIUOG00005013160	protein coding gene	Chr1:79944533-79945343 (+)

Homology

• Human Ortholog
  SCYGR1, small cysteine and glycine repeat containing 1

• Vertebrate Orthologs
  8

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SCYGR1, small cysteine and glycine repeat containing 1
  
• Synonyms
  KRTAP28-1
• Links
  HGNC:34218

  NCBI Gene ID: 112441428

  UniProt: A0A286YEY9

  
  
• Chr Location
  2q36.3; chr2:227387683-227387949 (-)  GRCh38

---

• Human Ortholog
  SCYGR2, small cysteine and glycine repeat containing 2
  
• Synonyms
  KRTAP28-2
• Links
  HGNC:34220

  NCBI Gene ID: 112441435

  UniProt: A0A286YFB4

  
  
• Chr Location
  2q36.3; chr2:227598893-227599255 (+)  GRCh38

---

• Human Ortholog
  SCYGR3, small cysteine and glycine repeat containing 3
  
• Synonyms
  KRTAP28-3
• Links
  HGNC:34222

  NCBI Gene ID: 112441429

  UniProt: A0A286YF60

  
  
• Chr Location
  2q36.3; chr2:227614538-227614840 (-)  GRCh38

---

• Human Ortholog
  SCYGR4, small cysteine and glycine repeat containing 4
  
• Synonyms
  KRTAP28-4
• Links
  HGNC:34223

  NCBI Gene ID: 112441430

  UniProt: A0A286YEV6

  
  
• Chr Location
  2q36.3; chr2:227617498-227617815 (+)  GRCh38

---

• Human Ortholog
  SCYGR6, small cysteine and glycine repeat containing 6
  
• Synonyms
  KRTAP28-6
• Links
  HGNC:34225

  NCBI Gene ID: 112441431

  UniProt: A0A286YF77

  
  
• Chr Location
  2q36.3; chr2:227724440-227724757 (-)  GRCh38

---

• Human Ortholog
  SCYGR7, small cysteine and glycine repeat containing 7
  
• Synonyms
  KRTAP28-7
• Links
  HGNC:34226

  NCBI Gene ID: 112441438

  UniProt: A0A286YF01

  
  
• Chr Location
  2q36.3; chr2:227728335-227728625 (+)  GRCh38

---

• Human Ortholog
  SCYGR8, small cysteine and glycine repeat containing 8
  
• Synonyms
  KRTAP28-8
• Links
  HGNC:34227

  NCBI Gene ID: 112441432

  UniProt: A0A286YFG1

  
  
• Chr Location
  2q36.3; chr2:227745894-227746220 (+)  GRCh38

---

• Human Ortholog
  SCYGR9, small cysteine and glycine repeat containing 9 (pseudogene)
  
• Synonyms
  KRTAP28-9, KRTAP28p1
• Links
  HGNC:34219

  NCBI Gene ID: 117134595

  UniProt: P0DSO2

  
  
• Chr Location
  2q36.3; chr2:227587237-227587515 (-)  GRCh38

---

• MGI Vertebrate Homology
  A030014E15Rik stringent orthology
  8 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SCYGR1, SCYGR2, SCYGR3, SCYGR4, SCYGR6, SCYGR7, SCYGR8, SCYGR9
• Gene Tree
  A030014E15Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000113973 (Evidence)
• NCBI Gene
  77917

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113973	Ensembl Gene Model | MGI Sequence Detail	796	C57BL/6J
transcript	ENSMUST00000223400	Ensembl | MGI Sequence Detail	796	Not Applicable
polypeptide	ENSMUSP00000152588	Ensembl | MGI Sequence Detail	120	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A030014E15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7639	Chr1:82902636-82902638 (+)	-1 bp
Tssr7640	Chr1:82903102-82903111 (+)	469 bp