6030440G07Rik Gene Detail

Summary

• Symbol
  6030440G07Rik
• Name
  RIKEN cDNA 6030440G07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925128
  NCBI Gene: 77878
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:110960832-110980303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  692 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925128	lncRNA gene	Chr12:110960832-110980306 (+)
129S1/SvImJ	ENSMUSG00200027576	lncRNA gene	Chr12:102737220-102756694 (+)
A/J	ENSMUSG00195047164	lncRNA gene	Chr12:105260318-105279811 (+)
AKR/J	ENSMUSG00220036495	lncRNA gene	Chr12:103153851-103173386 (+)
BALB/cJ	ENSMUSG00180049854	lncRNA gene	Chr12:104500306-104519786 (+)
C3H/HeJ	ENSMUSG00175048840	lncRNA gene	Chr12:107071851-107091349 (+)
C57BL/6NJ	ENSMUSG00215047735	lncRNA gene	Chr12:103773160-103792635 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041953	lncRNA gene	Chr12:103240887-103262827 (+)
CBA/J	ENSMUSG00210031763	lncRNA gene	Chr12:104133323-104152822 (+)
DBA/2J	ENSMUSG00185029719	lncRNA gene	Chr12:105963258-105982740 (+)
FVB/NJ	ENSMUSG00205048022	lncRNA gene	Chr12:103185091-103204567 (+)
JF1/MsJ	ENSUMUG00000027135	lncRNA gene	Chr12:110722973-110742697 (+)
LP/J	ENSMUSG00230044674	lncRNA gene	Chr12:113001829-113021300 (+)
NOD/ShiLtJ	ENSMUSG00190032348	lncRNA gene	Chr12:82026720-82046261 (-)
NZO/HlLtJ	ENSMUSG00225043101	lncRNA gene	Chr12:114750014-114769485 (+)
PWK/PhJ	ENSLUMG00010051599	lncRNA gene	Chr12:104179287-104198804 (+)
SPRET/EiJ	ENSMSPG00010026028	lncRNA gene	Chr12:106466067-106485851 (+)
WSB/EiJ	ENSIUOG00005037085	lncRNA gene	Chr12:103170653-103190138 (+)

Homology

• Gene Tree
  6030440G07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000113056 (Evidence)
• NCBI Gene
  77878

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113056	Ensembl Gene Model | MGI Sequence Detail	19472	C57BL/6J
transcript	ENSMUST00000221849	Ensembl | MGI Sequence Detail	1090	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14