B430319H21Rik Gene Detail

Summary

• Symbol
  B430319H21Rik
• Name
  RIKEN cDNA B430319H21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925099
  NCBI Gene: 77849
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:63064740-63079280 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 39.02 cM, cytoband B2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  550 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925099	lncRNA gene	Chr11:63064740-63079280 (+)
129S1/SvImJ	ENSMUSG00200037345	lncRNA gene	Chr11:59993335-60007877 (+)
A/J	ENSMUSG00195042550	lncRNA gene	Chr11:60032758-60047397 (+)
AKR/J	ENSMUSG00220050147	lncRNA gene	Chr11:60136632-60151178 (+)
BALB/cJ	ENSMUSG00180050571	lncRNA gene	Chr11:60078711-60093253 (+)
C3H/HeJ	ENSMUSG00175049564	lncRNA gene	Chr11:60049516-60064154 (+)
C57BL/6NJ	ENSMUSG00215040680	lncRNA gene	Chr11:59827734-59842276 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004751	lincRNA gene	Chr11:57997457-58012250 (+)
CAST/EiJ	ENSTCUG00005046972	lncRNA gene	Chr11:59597826-59612610 (+)
CBA/J	ENSMUSG00210038989	lncRNA gene	Chr11:59882933-59897573 (+)
DBA/2J	ENSMUSG00185045431	lncRNA gene	Chr11:60074263-60088806 (+)
FVB/NJ	ENSMUSG00205052107	lncRNA gene	Chr11:59952941-59967498 (+)
JF1/MsJ	ENSUMUG00000050604	lncRNA gene	Chr11:60496651-60514500 (+)
LP/J	ENSMUSG00230053998	lncRNA gene	Chr11:61214479-61229019 (+)
NOD/ShiLtJ	ENSMUSG00190051976	lncRNA gene	Chr11:60069891-60084443 (+)
NZO/HlLtJ	ENSMUSG00225047938	lncRNA gene	Chr11:63361438-63376042 (+)
PWK/PhJ	ENSLUMG00010036956	lncRNA gene	Chr11:60017246-60031872 (+)
SPRET/EiJ	ENSMSPG00010041840	lncRNA gene	Chr11:60688147-60701886 (+)
WSB/EiJ	ENSIUOG00005040910	lncRNA gene	Chr11:59984826-59999499 (+)

Homology

• Gene Tree
  B430319H21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving B430319H21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085532 (Evidence)
• NCBI Gene
  77849

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085532	Ensembl Gene Model | MGI Sequence Detail	14541	C57BL/6J
transcript	ENSMUST00000123420	Ensembl | MGI Sequence Detail	734	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573