Ube4bos1 Gene Detail

Summary

• Symbol
  Ube4bos1
• Name
  ubiquitination factor E4B, opposite strand 1
• Synonyms
  A930028C08Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1925072
  NCBI Gene: 77822
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:149432342-149449734 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 79.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925072	antisense lncRNA gene	Chr4:149432342-149449734 (+)
129S1/SvImJ	ENSMUSG00200047488	lncRNA gene	Chr4:140478410-140495664 (+)
A/J	ENSMUSG00195020707	lncRNA gene	Chr4:142128677-142146075 (+)
AKR/J	ENSMUSG00220048788	lncRNA gene	Chr4:141722566-141739688 (+)
BALB/cJ	ENSMUSG00180047128	lncRNA gene	Chr4:139811271-139828670 (+)
C3H/HeJ	ENSMUSG00175019908	lncRNA gene	Chr4:143103019-143120137 (+)
C57BL/6NJ	ENSMUSG00215025399	lncRNA gene	Chr4:141935575-141952970 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003601	antisense lncRNA gene	Chr4:139213860-139231688 (+)
CAST/EiJ	ENSTCUG00005036123	lncRNA gene	Chr4:145770743-145788229 (+)
CBA/J	ENSMUSG00210029673	lncRNA gene	Chr4:141754647-141771769 (+)
DBA/2J	ENSMUSG00185016752	lncRNA gene	Chr4:145316135-145333257 (+)
FVB/NJ	ENSMUSG00205042560	lncRNA gene	Chr4:140205127-140223216 (+)
JF1/MsJ	ENSUMUG00000007709	lncRNA gene	Chr4:148327404-148345495 (+)
LP/J	ENSMUSG00230017374	lncRNA gene	Chr4:152050245-152067488 (+)
NOD/ShiLtJ	ENSMUSG00190004126	lncRNA gene	Chr4:141422693-141439819 (+)
NZO/HlLtJ	ENSMUSG00225024477	lncRNA gene	Chr4:156049197-156066583 (+)
PWK/PhJ	ENSLUMG00010047568	lncRNA gene	Chr4:140606250-140623370 (+)
SPRET/EiJ	ENSMSPG00010025083	lncRNA gene	Chr4:142529068-142545907 (+)
WSB/EiJ	ENSIUOG00005046786	lncRNA gene	Chr4:139587414-139604759 (+)

Homology

• Gene Tree
  Ube4bos1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Ube4bos1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000085819 (Evidence)
• NCBI Gene
  77822

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085819	Ensembl Gene Model | MGI Sequence Detail	17393	C57BL/6J
transcript	ENSMUST00000141259	Ensembl | MGI Sequence Detail	2227	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Ube4bos1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40325	Chr4:149432336-149432346 (+)	-1 bp