A930028O11Rik Gene Detail

Summary

• Symbol
  A930028O11Rik
• Name
  RIKEN cDNA A930028O11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925070
  NCBI Gene: 77820
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:58604982-58606089 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925070	lncRNA gene	Chr3:58604982-58606089 (+)
129S1/SvImJ	ENSMUSG00200023427	unclassified gene	Chr3:55488176-55489283 (+)
A/J	ENSMUSG00195033155	unclassified gene	Chr3:55397502-55398609 (+)
AKR/J	ENSMUSG00220030962	unclassified gene	Chr3:55457618-55458727 (+)
BALB/cJ	ENSMUSG00180025670	unclassified gene	Chr3:55477677-55478784 (+)
C3H/HeJ	ENSMUSG00175008858	unclassified gene	Chr3:55319013-55320124 (+)
C57BL/6NJ	ENSMUSG00215009185	unclassified gene	Chr3:55767981-55769088 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000973	unclassified gene	Chr3:52110428-52111587 (+)
CAST/EiJ	ENSTCUG00005002433	unclassified gene	Chr3:55075860-55076967 (+)
CBA/J	ENSMUSG00210003764	unclassified gene	Chr3:55434684-55435791 (+)
DBA/2J	ENSMUSG00185028647	unclassified gene	Chr3:55603571-55604681 (+)
FVB/NJ	ENSMUSG00205003730	unclassified gene	Chr3:54591875-54592982 (+)
JF1/MsJ	ENSUMUG00000003103	unclassified gene	Chr3:55022660-55023767 (+)
LP/J	ENSMUSG00230004629	unclassified gene	Chr3:57620259-57621366 (+)
NOD/ShiLtJ	ENSMUSG00190033540	unclassified gene	Chr3:55795729-55796838 (+)
NZO/HlLtJ	ENSMUSG00225018774	unclassified gene	Chr3:60231751-60232858 (+)
PWK/PhJ	ENSLUMG00010005488	unclassified gene	Chr3:55121382-55122489 (+)
SPRET/EiJ	ENSMSPG00010007833	unclassified gene	Chr3:55978344-55979446 (+)
WSB/EiJ	ENSIUOG00005009226	unclassified gene	Chr3:55574366-55575473 (+)

Homology

• Gene Tree
  A930028O11Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000105226 (Evidence)
• NCBI Gene
  77820

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105226	Ensembl Gene Model | MGI Sequence Detail	1108	C57BL/6J
transcript	AK020901	GenBank | ENA | DDBJ | MGI Sequence Detail	1109	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573