A230103O09Rik Gene Detail

Summary

• Symbol
  A230103O09Rik
• Name
  RIKEN cDNA A230103O09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925003
  NCBI Gene: 77753
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:39977655-39984651 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  276 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925003	lncRNA gene	Chr13:39944907-39998316 (+)
129S1/SvImJ	ENSMUSG00200013806	lncRNA gene	Chr13:37196883-37250284 (+)
A/J	ENSMUSG00195035769	lncRNA gene	Chr13:36276936-36330324 (+)
AKR/J	ENSMUSG00220033543	lncRNA gene	Chr13:36065920-36119332 (+)
BALB/cJ	ENSMUSG00180008480	lncRNA gene	Chr13:36582430-36635848 (+)
C3H/HeJ	ENSMUSG00175014081	lncRNA gene	Chr13:36534957-36588370 (+)
C57BL/6NJ	ENSMUSG00215015698	lncRNA gene	Chr13:36682187-36735543 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037750	lncRNA gene	Chr13:36612401-36666058 (+)
CBA/J	ENSMUSG00210011861	lncRNA gene	Chr13:36553057-36606472 (+)
DBA/2J	ENSMUSG00185035211	lncRNA gene	Chr13:37349980-37403376 (+)
FVB/NJ	ENSMUSG00205032511	lncRNA gene	Chr13:36228799-36282194 (+)
JF1/MsJ	ENSUMUG00000040149	lncRNA gene	Chr13:36909908-36963399 (+)
LP/J	ENSMUSG00230017877	lncRNA gene	Chr13:46685393-46738810 (+)
NOD/ShiLtJ	ENSMUSG00190013700	lncRNA gene	Chr13:36752317-36805711 (+)
NZO/HlLtJ	ENSMUSG00225035601	lncRNA gene	Chr13:40468501-40521900 (+)
PWK/PhJ	ENSLUMG00010030272	lncRNA gene	Chr13:35745939-35799468 (+)
SPRET/EiJ	ENSMSPG00010011740	lncRNA gene	Chr13:35740093-35800527 (+)
WSB/EiJ	ENSIUOG00005028961	lncRNA gene	Chr13:35877719-35931079 (+)

Homology

• Gene Tree
  A230103O09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A230103O09Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  2

• Ensembl
  ENSMUSG00000114491 (Evidence)
• NCBI Gene
  77753

Representative Sequences			Length	Strain/Species
genomic	77753	NCBI Gene Model | MGI Sequence Detail	6997	C57BL/6J
transcript	NR_167689	RefSeq | MGI Sequence Detail	910	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A230103O09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119366	Chr13:39977651-39977689 (+)	15 bp