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Lcn12 Gene Detail
Summary
  • Symbol
    Lcn12
  • Name
    lipocalin 12
  • Synonyms
    9230102M18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924951
    NCBI Gene: 77701
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:25380857-25383923 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 17.30 cM, cytoband A3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    277 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924951
 protein coding gene Chr2:25380857-25384073 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025450
 protein coding gene Chr2:23381072-23384138 (-)
A/J MGP_AJ_G0025427
 protein coding gene Chr2:22476594-22479660 (-)
AKR/J MGP_AKRJ_G0025397
 protein coding gene Chr2:23225149-23228215 (-)
BALB/cJ MGP_BALBcJ_G0025423
 protein coding gene Chr2:22588813-22591879 (-)
C3H/HeJ MGP_C3HHeJ_G0025184
 protein coding gene Chr2:23172047-23175113 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025867
 protein coding gene Chr2:24125724-24128790 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023278
 protein coding gene Chr2:21388556-21391569 (-)
CAST/EiJ MGP_CASTEiJ_G0024647
 protein coding gene Chr2:23041960-23045009 (-)
CBA/J MGP_CBAJ_G0025162
 protein coding gene Chr2:24959476-24962542 (-)
DBA/2J MGP_DBA2J_G0025295
 protein coding gene Chr2:22314322-22317388 (-)
FVB/NJ MGP_FVBNJ_G0025257
 protein coding gene Chr2:22058891-22061957 (-)
LP/J MGP_LPJ_G0025381
 protein coding gene Chr2:23321636-23324702 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025288
 protein coding gene Chr2:25155896-25158962 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025926
 protein coding gene Chr2:23178284-23181350 (-)
PWK/PhJ MGP_PWKPhJ_G0024395
 protein coding gene Chr2:22136687-22139748 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024195
 protein coding gene Chr2:23320250-23323329 (-)
WSB/EiJ MGP_WSBEiJ_G0024716
 protein coding gene Chr2:23254838-23257899 (-)



Homology
more
  • Human Ortholog
    LCN12, lipocalin 12
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LCN12, lipocalin 12
  • Links
    NCBI Gene ID: 286256
    UniProt: Q6JVE5

  • Chr Location
    9q34.3; chr9:136949197-136956538 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026943 Ensembl Gene Model | MGI Sequence Detail 3067 C57BL/6J ±  kb
transcript ENSMUST00000028312 Ensembl | MGI Sequence Detail 716 Not Applicable  
polypeptide ENSMUSP00000028312 Ensembl | MGI Sequence Detail 193 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:92984 Suzuki K, et al., Molecular evolution of epididymal lipocalin genes localized on mouse chromosome 2. Gene. 2004 Sep 15;339:49-59
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory