9130230N09Rik Gene Detail

Summary

• Symbol
  9130230N09Rik
• Name
  RIKEN cDNA 9130230N09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924921
  NCBI Gene: 100137727
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:22808913-22831729 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  649 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924921	lncRNA gene	Chr11:22808913-22831729 (+)
129S1/SvImJ	ENSMUSG00200022047	lncRNA gene	Chr11:19826252-19828585 (+)
A/J	ENSMUSG00195005358	lncRNA gene	Chr11:19673614-19675947 (+)
AKR/J	ENSMUSG00220003620	lncRNA gene	Chr11:19761857-19764183 (+)
BALB/cJ	ENSMUSG00180004236	lncRNA gene	Chr11:19665800-19668135 (+)
C3H/HeJ	ENSMUSG00175008295	lncRNA gene	Chr11:19688520-19690846 (+)
C57BL/6NJ	ENSMUSG00215003485	lncRNA gene	Chr11:19752809-19755142 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013297	unclassified non-coding RNA gene	Chr11:18677379-18679702 (+)
CAST/EiJ	ENSTCUG00005007326	lncRNA gene	Chr11:19658337-19660665 (+)
CBA/J	ENSMUSG00210009607	lncRNA gene	Chr11:19668589-19670923 (+)
DBA/2J	ENSMUSG00185011992	lncRNA gene	Chr11:19780029-19782355 (+)
FVB/NJ	ENSMUSG00205005324	lncRNA gene	Chr11:19723473-19725799 (+)
JF1/MsJ	ENSUMUG00000006122	lncRNA gene	Chr11:19989835-19992164 (+)
LP/J	ENSMUSG00230015318	lncRNA gene	Chr11:20815861-20818196 (+)
NOD/ShiLtJ	ENSMUSG00190008890	lncRNA gene	Chr11:19833867-19836200 (+)
NZO/HlLtJ	ENSMUSG00225022064	lncRNA gene	Chr11:22858093-22860426 (+)
PWK/PhJ	ENSLUMG00010012134	lncRNA gene	Chr11:19669109-19671437 (+)
SPRET/EiJ	ENSMSPG00010019516	lncRNA gene	Chr11:19912602-19914940 (+)
WSB/EiJ	ENSIUOG00005010347	lncRNA gene	Chr11:19725146-19727472 (+)

Homology

• Gene Tree
  9130230N09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving 9130230N09Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  600
• Tissues
  3
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000092626 (Evidence)
• NCBI Gene
  100137727

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092626	Ensembl Gene Model | MGI Sequence Detail	22817	C57BL/6J
transcript	ENSMUST00000247309	Ensembl | MGI Sequence Detail	1397	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 2

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:213692 Zhu JG, et al., Long noncoding RNAs expression profile of the developing mouse heart. J Cell Biochem. 2014 May;115(5):910-8

TSS for 9130230N09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100585	Chr11:22809861-22809873 (+)	954 bp
Tssr100586	Chr11:22810835-22810838 (+)	1,924 bp