Ptprtos MGI Mouse Gene Detail - MGI:1924895 - protein tyrosine phosphatase receptor type T, opposite strand

Sequence Map

Chr2:162232733-162235865 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924895	antisense lncRNA gene	Chr2:162232733-162235866 (+)
129S1/SvImJ	ENSMUSG00200017787	lncRNA gene	Chr2:159085572-159088700 (+)
A/J	ENSMUSG00195022862	lncRNA gene	Chr2:159470311-159473440 (+)
AKR/J	ENSMUSG00220014484	lncRNA gene	Chr2:158796371-158799501 (+)
BALB/cJ	ENSMUSG00180050271	lncRNA gene	Chr2:158924088-158927217 (+)
C3H/HeJ	ENSMUSG00175051944	lncRNA gene	Chr2:159673949-159677078 (+)
C57BL/6NJ	ENSMUSG00215039838	lncRNA gene	Chr2:159100773-159103905 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003301	antisense lncRNA gene	Chr2:154233825-154236918 (+)
CAST/EiJ	ENSTCUG00005047923	lncRNA gene	Chr2:158024595-158027724 (+)
CBA/J	ENSMUSG00210017380	lncRNA gene	Chr2:159604998-159608127 (+)
DBA/2J	ENSMUSG00185050890	lncRNA gene	Chr2:159330736-159333865 (+)
FVB/NJ	ENSMUSG00205046241	lncRNA gene	Chr2:158354949-158358078 (+)
JF1/MsJ	ENSUMUG00000034124	lncRNA gene	Chr2:158963438-158966566 (+)
LP/J	ENSMUSG00230046162	lncRNA gene	Chr2:160875152-160878280 (+)
NOD/ShiLtJ	ENSMUSG00190047589	lncRNA gene	Chr2:158969557-158972686 (+)
NZO/HlLtJ	ENSMUSG00225053494	lncRNA gene	Chr2:168894248-168897380 (+)
PWK/PhJ	ENSLUMG00010048739	lncRNA gene	Chr2:158890045-158893180 (+)
SPRET/EiJ	ENSMSPG00010036348	lncRNA gene	Chr2:161650850-161653991 (+)
WSB/EiJ	ENSIUOG00005045625	lncRNA gene	Chr2:158747542-158750672 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000084919	Ensembl Gene Model \| MGI Sequence Detail	3133	C57BL/6J	± kb
	transcript	ENSMUST00000151688	Ensembl \| MGI Sequence Detail	630	Not Applicable

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Summaries

All 9
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Ptprtos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr733	Chr2:162234311-162234313 (+)	1,579 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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