C430039J16Rik Gene Detail

Summary

• Symbol
  C430039J16Rik
• Name
  RIKEN cDNA C430039J16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924873
  NCBI Gene: 77623
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:97419691-97433289 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 50.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  563 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924873	lncRNA gene	Chr13:97419691-97433289 (+)
129S1/SvImJ	ENSMUSG00200009883	lncRNA gene	Chr13:91948837-91951193 (+)
A/J	ENSMUSG00195029680	lncRNA gene	Chr13:92455338-92457735 (+)
AKR/J	ENSMUSG00220014190	lncRNA gene	Chr13:90906030-90908386 (+)
BALB/cJ	ENSMUSG00180038510	lncRNA gene	Chr13:92971254-92973631 (+)
C3H/HeJ	ENSMUSG00175017969	lncRNA gene	Chr13:93145377-93147733 (+)
C57BL/6NJ	ENSMUSG00215033478	lncRNA gene	Chr13:93023004-93025381 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004991	lincRNA gene	Chr13:90908609-90911574 (+)
CAST/EiJ	ENSTCUG00005011848	lncRNA gene	Chr13:92232299-92234739 (+)
CBA/J	ENSMUSG00210012052	lncRNA gene	Chr13:92467665-92470046 (+)
DBA/2J	ENSMUSG00185020294	lncRNA gene	Chr13:96128327-96130710 (+)
FVB/NJ	ENSMUSG00205032922	lncRNA gene	Chr13:91932976-91935332 (+)
JF1/MsJ	ENSUMUG00000032722	lncRNA gene	Chr13:95815247-95817661 (+)
LP/J	ENSMUSG00230037604	lncRNA gene	Chr13:106133519-106135875 (+)
NOD/ShiLtJ	ENSMUSG00190041226	lncRNA gene	Chr13:92803656-92806033 (+)
NZO/HlLtJ	ENSMUSG00225033957	lncRNA gene	Chr13:98658672-98661028 (+)
PWK/PhJ	ENSLUMG00010025749	lncRNA gene	Chr13:91907418-91909816 (+)
SPRET/EiJ	ENSMSPG00010009168	lncRNA gene	Chr13:93180901-93183279 (+)
WSB/EiJ	ENSIUOG00005035058	lncRNA gene	Chr13:91830398-91832757 (+)

Homology

• Gene Tree
  C430039J16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000097932 (Evidence)
• NCBI Gene
  77623

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097932	Ensembl Gene Model | MGI Sequence Detail	13599	C57BL/6J
transcript	ENSMUST00000359066	Ensembl | MGI Sequence Detail	1026	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C430039J16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120775	Chr13:97428682-97428685 (+)	8,993 bp
Tssr120776	Chr13:97430530-97430533 (+)	10,841 bp