C030047K22Rik Gene Detail

Summary

• Symbol
  C030047K22Rik
• Name
  RIKEN cDNA C030047K22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924868
  NCBI Gene: 77618
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:18697770-18818860 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 8.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3929 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924868	lncRNA gene	Chr15:18697369-18818911 (-)
129S1/SvImJ	ENSMUSG00200004631	lncRNA gene	Chr15:15700549-15827806 (-)
A/J	ENSMUSG00195011830	lncRNA gene	Chr15:15622329-15743372 (-)
AKR/J	ENSMUSG00220001712	lncRNA gene	Chr15:15527256-15648365 (-)
BALB/cJ	ENSMUSG00180009720	lncRNA gene	Chr15:15609836-15730946 (-)
C3H/HeJ	ENSMUSG00175002056	lncRNA gene	Chr15:15768842-15889946 (-)
C57BL/6NJ	ENSMUSG00215008404	lncRNA gene	Chr15:15639092-15760200 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013425	unclassified non-coding RNA gene	Chr15:14772678-14878668 (-)
CAST/EiJ	ENSTCUG00005002617	lncRNA gene	Chr15:15724825-15852097 (-)
CBA/J	ENSMUSG00210004856	lncRNA gene	Chr15:15771610-15892716 (-)
DBA/2J	ENSMUSG00185003392	lncRNA gene	Chr15:15709762-15830865 (-)
FVB/NJ	ENSMUSG00205010694	lncRNA gene	Chr15:15595907-15716960 (-)
JF1/MsJ	ENSUMUG00000013889	lncRNA gene	Chr15:15771461-15892581 (-)
LP/J	ENSMUSG00230016397	lncRNA gene	Chr15:19174833-19302085 (-)
NOD/ShiLtJ	ENSMUSG00190001813	lncRNA gene	Chr15:15657622-15778724 (-)
NZO/HlLtJ	ENSMUSG00225024277	lncRNA gene	Chr15:19418654-19539703 (-)
PWK/PhJ	ENSLUMG00010014893	lncRNA gene	Chr15:15879598-16000507 (-)
SPRET/EiJ	ENSMSPG00010001055	lncRNA gene	Chr15:16114105-16239283 (-)
WSB/EiJ	ENSIUOG00005012194	lncRNA gene	Chr15:15690223-15815222 (-)

Homology

• Gene Tree
  C030047K22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving C030047K22Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000084873 (Evidence)
• NCBI Gene
  77618

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084873	Ensembl Gene Model | MGI Sequence Detail	121091	C57BL/6J
transcript	ENSMUST00000150382	Ensembl | MGI Sequence Detail	1164	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573