C030037D09Rik Gene Detail

Summary

• Symbol
  C030037D09Rik
• Name
  RIKEN cDNA C030037D09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924865
  NCBI Gene: 193280
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:88609469-88619398 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 54.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924865	lncRNA gene	Chr11:88608815-88620074 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005279	lincRNA gene	Chr11:90455113-90465973 (+)
A/J	MGP_AJ_G0005264	lincRNA gene	Chr11:86941994-86953428 (+)
AKR/J	MGP_AKRJ_G0005241	lincRNA gene	Chr11:89581066-89591759 (+)
BALB/cJ	MGP_BALBcJ_G0005244	lincRNA gene	Chr11:87357261-87369642 (+)
C3H/HeJ	MGP_C3HHeJ_G0005193	lincRNA gene	Chr11:89616740-89630516 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005396	lincRNA gene	Chr11:93198301-93210322 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004789	lincRNA gene	Chr11:83968520-83979419 (+)
CAST/EiJ	MGP_CASTEiJ_G0005140	lincRNA gene	Chr11:90314048-90326471 (+)
CBA/J	MGP_CBAJ_G0005183	lincRNA gene	Chr11:97172477-97185167 (+)
DBA/2J	MGP_DBA2J_G0005200	lincRNA gene	Chr11:86497801-86509040 (+)
FVB/NJ	MGP_FVBNJ_G0005225	lincRNA gene	Chr11:86004181-86014300 (+)
LP/J	MGP_LPJ_G0005281	lincRNA gene	Chr11:90975625-90988456 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005208	lincRNA gene	Chr11:97118318-97135268 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005400	lincRNA gene	Chr11:89798067-89810411 (+)
PWK/PhJ	MGP_PWKPhJ_G0005089	lincRNA gene	Chr11:87351343-87361467 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005011	lincRNA gene	Chr11:89380517-89390744 (+)
WSB/EiJ	MGP_WSBEiJ_G0005188	lincRNA gene	Chr11:89695886-89708343 (+)

Homology

• Gene Tree
  C030037D09Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  6
• Targeted
  3
• Genomic Mutations
  4 involving C030037D09Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  8
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  1

• Ensembl
  ENSMUSG00000087574 (Evidence)
• NCBI Gene
  193280

Representative Sequences			Length	Strain/Species
genomic	193280	NCBI Gene Model | MGI Sequence Detail	9930	C57BL/6J
transcript	NR_038058	RefSeq | MGI Sequence Detail	1056	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 8

  Primer pair 1

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 11
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for C030037D09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104050	Chr11:88609268-88609330 (+)	-170 bp
Tssr104051	Chr11:88618887-88618902 (+)	9,426 bp