5730596B20Rik Gene Detail

Summary

• Symbol
  5730596B20Rik
• Name
  RIKEN cDNA 5730596B20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924830
  NCBI Gene: 77580
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:52154135-52157831 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 25.40 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924830	lncRNA gene	Chr6:52154135-52157831 (+)
129S1/SvImJ	ENSMUSG00200005738	unclassified gene	Chr6:49131439-49135134 (+)
A/J	ENSMUSG00195006929	unclassified gene	Chr6:48855359-48859057 (+)
AKR/J	ENSMUSG00220004145	unclassified gene	Chr6:48564430-48568125 (+)
BALB/cJ	ENSMUSG00180024035	unclassified gene	Chr6:49157077-49160775 (+)
C3H/HeJ	ENSMUSG00175017699	unclassified gene	Chr6:48923649-48927346 (+)
C57BL/6NJ	ENSMUSG00215012029	unclassified gene	Chr6:49107913-49111610 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028385	protein coding gene	Chr6:46661072-46664433 (+)
CAST/EiJ	ENSTCUG00005005129	unclassified gene	Chr6:48413983-48417675 (+)
CBA/J	ENSMUSG00210018430	unclassified gene	Chr6:48967950-48971647 (+)
DBA/2J	ENSMUSG00185014949	unclassified gene	Chr6:49550185-49553882 (+)
FVB/NJ	ENSMUSG00205029962	unclassified gene	Chr6:49208309-49212006 (+)
JF1/MsJ	ENSUMUG00000016180	unclassified gene	Chr6:48922850-48926549 (+)
LP/J	ENSMUSG00230019834	unclassified gene	Chr6:50628738-50632433 (+)
NOD/ShiLtJ	ENSMUSG00190038606	unclassified gene	Chr6:48885330-48889029 (+)
NZO/HlLtJ	ENSMUSG00225013867	unclassified gene	Chr6:52612717-52616414 (+)
PWK/PhJ	ENSLUMG00010021448	unclassified gene	Chr6:48659877-48663574 (+)
SPRET/EiJ	ENSMSPG00010010387	unclassified gene	Chr6:49243837-49247532 (+)
WSB/EiJ	ENSIUOG00005028277	unclassified gene	Chr6:49230785-49234481 (+)

Homology

• Gene Tree
  5730596B20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 5730596B20Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  13 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000056468 (Evidence)
• NCBI Gene
  77580

Representative Sequences			Length	Strain/Species
genomic	77580	NCBI Gene Model | MGI Sequence Detail	3697	C57BL/6J
transcript	NR_163848	RefSeq | MGI Sequence Detail	3697	C57BL/6
polypeptide	Q8BQ08	UniProt | EBI | MGI Sequence Detail	205	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 22

  Phenotypes 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018