9330198I05Rik Gene Detail

Summary

• Symbol
  9330198I05Rik
• Name
  RIKEN cDNA 9330198I05 gene
• Synonyms
  Gm43082

• Feature Type
  lncRNA gene
• IDs
  MGI:1924810
  NCBI Gene: 77560
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:108506886-108511763 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924810	lncRNA gene	Chr5:108502761-108511763 (+)
129S1/SvImJ	ENSMUSG00200024411	lncRNA gene	Chr5:102257663-102261377 (+)
A/J	ENSMUSG00195042181	lncRNA gene	Chr5:101714518-101718214 (+)
AKR/J	ENSMUSG00220051850	lncRNA gene	Chr5:101264263-101267975 (+)
BALB/cJ	ENSMUSG00180037345	lncRNA gene	Chr5:101867348-101871044 (+)
C3H/HeJ	ENSMUSG00175048007	lncRNA gene	Chr5:103908948-103912666 (+)
C57BL/6NJ	ENSMUSG00215038646	lncRNA gene	Chr5:101911005-101914705 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006133	lincRNA gene	Chr5:101241723-101245407 (+)
CAST/EiJ	ENSTCUG00005031896	lncRNA gene	Chr5:101151775-101155468 (+)
CBA/J	ENSMUSG00210045424	lncRNA gene	Chr5:102666521-102670237 (+)
DBA/2J	ENSMUSG00185048762	lncRNA gene	Chr5:105570731-105574429 (+)
FVB/NJ	ENSMUSG00205041414	lncRNA gene	Chr5:101593142-101596860 (+)
JF1/MsJ	ENSUMUG00000016385	lncRNA gene	Chr5:108632068-108635780 (+)
LP/J	ENSMUSG00230032487	lncRNA gene	Chr5:109798723-109802435 (+)
NOD/ShiLtJ	ENSMUSG00190051604	lncRNA gene	Chr5:101566919-101570615 (+)
NZO/HlLtJ	ENSMUSG00225026490	lncRNA gene	Chr5:117420571-117424283 (+)
PWK/PhJ	ENSLUMG00010016844	lncRNA gene	Chr5:100618189-100621861 (+)
SPRET/EiJ	ENSMSPG00010047628	lncRNA gene	Chr5:103722896-103726593 (+)
WSB/EiJ	ENSIUOG00005043989	lncRNA gene	Chr5:104295959-104299673 (+)

Homology

• Gene Tree
  9330198I05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9330198I05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000104904 (Evidence)
• NCBI Gene
  77560

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104904	Ensembl Gene Model | MGI Sequence Detail	4878	C57BL/6J
transcript	ENSMUST00000311132	Ensembl | MGI Sequence Detail	1481	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:5663219

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573