9330198N18Rik Gene Detail

Summary

• Symbol
  9330198N18Rik
• Name
  RIKEN cDNA 9330198N18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924766
  NCBI Gene: 115489511, 77516
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:30515610-30579226 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 21.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1571 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924766	lncRNA gene	Chr2:30515610-30579226 (+)
129S1/SvImJ	ENSMUSG00200053041	lncRNA gene	Chr2:27490656-27550202 (+)
A/J	ENSMUSG00195050805	lncRNA gene	Chr2:27584591-27644132 (+)
AKR/J	ENSMUSG00220053681	lncRNA gene	Chr2:27703147-27762668 (+)
BALB/cJ	ENSMUSG00180054529	lncRNA gene	Chr2:27603626-27663189 (+)
C3H/HeJ	ENSMUSG00175053961	lncRNA gene	Chr2:27572886-27632434 (+)
C57BL/6NJ	ENSMUSG00215050183	lncRNA gene	Chr2:27638568-27698126 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005355	lincRNA gene	Chr2:26494164-26551045 (+)
CAST/EiJ	ENSTCUG00005053301	lncRNA gene	Chr2:27312891-27372912 (+)
CBA/J	ENSMUSG00210017708	lncRNA gene	Chr2:27645794-27705340 (+)
DBA/2J	ENSMUSG00185053774	lncRNA gene	Chr2:27498618-27558168 (+)
FVB/NJ	ENSMUSG00205051700	lncRNA gene	Chr2:27350704-27410230 (+)
JF1/MsJ	ENSUMUG00000056602	lncRNA gene	Chr2:27395445-27455552 (+)
LP/J	ENSMUSG00230045286	lncRNA gene	Chr2:29426331-29485877 (+)
NOD/ShiLtJ	ENSMUSG00190053508	lncRNA gene	Chr2:27605323-27664854 (+)
NZO/HlLtJ	ENSMUSG00225010868	lncRNA gene	Chr2:37176390-37235912 (+)
PWK/PhJ	ENSLUMG00010052661	lncRNA gene	Chr2:27472477-27532605 (+)
SPRET/EiJ	ENSMSPG00010047950	lncRNA gene	Chr2:28203825-28262975 (+)
WSB/EiJ	ENSIUOG00005052787	lncRNA gene	Chr2:27450940-27510463 (+)

Homology

• Gene Tree
  9330198N18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000086405 (Evidence)
• NCBI Gene
  115489511, 77516

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086405	Ensembl Gene Model | MGI Sequence Detail	63617	C57BL/6J
transcript	ENSMUST00000146702	Ensembl | MGI Sequence Detail	1247	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9330198N18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17129	Chr2:30526561-30526574 (+)	10,958 bp