9330185C12Rik Gene Detail

Summary

• Symbol
  9330185C12Rik
• Name
  RIKEN cDNA 9330185C12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924761
  NCBI Gene: 77511
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:113819115-113892380 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 50.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2661 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924761	lncRNA gene	Chr1:113819115-113892380 (-)
129S1/SvImJ	ENSMUSG00200000415	lncRNA gene	Chr1:111289226-111358940 (-)
A/J	ENSMUSG00195008086	lncRNA gene	Chr1:110581537-110651248 (-)
AKR/J	ENSMUSG00220000276	lncRNA gene	Chr1:110596022-110668777 (-)
BALB/cJ	ENSMUSG00180000432	lncRNA gene	Chr1:110864988-110934703 (-)
C3H/HeJ	ENSMUSG00175000605	lncRNA gene	Chr1:110842517-110915268 (-)
C57BL/6NJ	ENSMUSG00215007815	lncRNA gene	Chr1:110819568-110892325 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002966	lncRNA gene	Chr1:109981440-110050782 (-)
CBA/J	ENSMUSG00210000174	lncRNA gene	Chr1:110736223-110808966 (-)
DBA/2J	ENSMUSG00185013897	lncRNA gene	Chr1:115128599-115201359 (-)
FVB/NJ	ENSMUSG00205008477	lncRNA gene	Chr1:110053218-110122915 (-)
JF1/MsJ	ENSUMUG00000029087	lncRNA gene	Chr1:113774460-113852748 (-)
LP/J	ENSMUSG00230009023	lncRNA gene	Chr1:114393461-114463164 (-)
NOD/ShiLtJ	ENSMUSG00190000487	lncRNA gene	Chr1:110723877-110796635 (-)
NZO/HlLtJ	ENSMUSG00225002724	lncRNA gene	Chr1:118310120-118379820 (-)
PWK/PhJ	ENSLUMG00010000275	lncRNA gene	Chr1:110008416-110083528 (-)
SPRET/EiJ	ENSMSPG00010000588	lncRNA gene	Chr1:112292745-112370371 (-)
WSB/EiJ	ENSIUOG00005001104	lncRNA gene	Chr1:110442120-110512365 (-)

Homology

• Gene Tree
  9330185C12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  3 involving 9330185C12Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000097648 (Evidence)
• NCBI Gene
  77511

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097648	Ensembl Gene Model | MGI Sequence Detail	73266	C57BL/6J
transcript	ENSMUST00000180837	Ensembl | MGI Sequence Detail	1044	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9330185C12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13189	Chr1:113831804-113831811 (-)	60,572 bp