8030456M14Rik Gene Detail

Summary

• Symbol
  8030456M14Rik
• Name
  RIKEN cDNA 8030456M14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924742
  NCBI Gene: 77492
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:53378524-53380400 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924742	lncRNA gene	Chr19:53378524-53380400 (+)
129S1/SvImJ	ENSMUSG00200021891	lncRNA gene	Chr19:50064288-50065306 (+)
A/J	ENSMUSG00195018785	lncRNA gene	Chr19:50239053-50240071 (+)
AKR/J	ENSMUSG00220019590	lncRNA gene	Chr19:50008868-50009886 (+)
BALB/cJ	ENSMUSG00180022551	lncRNA gene	Chr19:50478734-50479752 (+)
C3H/HeJ	ENSMUSG00175006439	lncRNA gene	Chr19:50014335-50015353 (+)
C57BL/6NJ	ENSMUSG00215004965	lncRNA gene	Chr19:50106433-50107451 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017064	lncRNA gene	Chr19:49665345-49666363 (+)
CBA/J	ENSMUSG00210019381	lncRNA gene	Chr19:50093845-50094863 (+)
DBA/2J	ENSMUSG00185009154	lncRNA gene	Chr19:50592325-50593343 (+)
FVB/NJ	ENSMUSG00205035032	lncRNA gene	Chr19:49477146-49478164 (+)
JF1/MsJ	ENSUMUG00000038121	lncRNA gene	Chr19:50787620-50788640 (+)
LP/J	ENSMUSG00230028432	lncRNA gene	Chr19:51345996-51347014 (+)
NOD/ShiLtJ	ENSMUSG00190005614	lncRNA gene	Chr19:49962048-49963071 (+)
NZO/HlLtJ	ENSMUSG00225025699	lncRNA gene	Chr19:54948296-54949314 (+)
PWK/PhJ	ENSLUMG00010001230	lncRNA gene	Chr19:49840316-49841337 (+)
SPRET/EiJ	ENSMSPG00010008384	lncRNA gene	Chr19:49687662-49688670 (+)
WSB/EiJ	ENSIUOG00005006975	lncRNA gene	Chr19:49453474-49454492 (+)

Homology

• Gene Tree
  8030456M14Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000117768 (Evidence)
• NCBI Gene
  77492

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117768	Ensembl Gene Model | MGI Sequence Detail	1877	C57BL/6J
transcript	ENSMUST00000238029	Ensembl | MGI Sequence Detail	1877	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 8030456M14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156977	Chr19:53379204-53379251 (+)	704 bp
Tssr156978	Chr19:53379312-53379361 (+)	813 bp