C030014O09Rik Gene Detail

Summary

• Symbol
  C030014O09Rik
• Name
  RIKEN cDNA C030014O09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924713
  NCBI Gene: 77463
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:130682097-130683556 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, cytoband F3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924713	lncRNA gene	Chr2:130682097-130683556 (+)
129S1/SvImJ	ENSMUSG00200049304	lncRNA gene	Chr2:127725006-127725790 (+)
A/J	ENSMUSG00195030961	lncRNA gene	Chr2:127758139-127758923 (+)
AKR/J	ENSMUSG00220045803	lncRNA gene	Chr2:127518608-127519392 (+)
BALB/cJ	ENSMUSG00180049820	lncRNA gene	Chr2:127568969-127569759 (+)
C3H/HeJ	ENSMUSG00175047605	lncRNA gene	Chr2:128105752-128106542 (+)
C57BL/6NJ	ENSMUSG00215034124	lncRNA gene	Chr2:127606177-127606961 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040796	lncRNA gene	Chr2:126877994-126878784 (+)
CBA/J	ENSMUSG00210037901	lncRNA gene	Chr2:127962406-127963196 (+)
DBA/2J	ENSMUSG00185036263	lncRNA gene	Chr2:127611029-127611813 (+)
FVB/NJ	ENSMUSG00205043047	lncRNA gene	Chr2:126777548-126778338 (+)
JF1/MsJ	ENSUMUG00000031428	lncRNA gene	Chr2:127422825-127423616 (+)
LP/J	ENSMUSG00230039048	lncRNA gene	Chr2:129360195-129360979 (+)
NOD/ShiLtJ	ENSMUSG00190015461	lncRNA gene	Chr2:127719714-127720504 (+)
NZO/HlLtJ	ENSMUSG00225027653	lncRNA gene	Chr2:137269015-137269799 (+)
PWK/PhJ	ENSLUMG00010044255	lncRNA gene	Chr2:127394825-127395615 (+)
SPRET/EiJ	ENSMSPG00010033841	lncRNA gene	Chr2:129771821-129772610 (+)
WSB/EiJ	ENSIUOG00005044252	lncRNA gene	Chr2:127541565-127542355 (+)

Homology

• Gene Tree
  C030014O09Rik
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121224 (Evidence)
• NCBI Gene
  77463

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121224	Ensembl Gene Model | MGI Sequence Detail	1460	C57BL/6J
transcript	ENSMUST00000247507	Ensembl | MGI Sequence Detail	1460	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C030014O09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20233	Chr2:130682134-130682152 (+)	46 bp