Dmrta2os Gene Detail

Summary

• Symbol
  Dmrta2os
• Name
  doublesex and mab-3 related transcription factor like family A2, opposite strand
• Synonyms
  3010003L10Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1924703
  NCBI Gene: 77453
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:109833019-109835114 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 51.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924703	antisense lncRNA gene	Chr4:109833019-109836595 (-)
129S1/SvImJ	ENSMUSG00200050668	lncRNA gene	Chr4:104879270-104881351 (-)
A/J	ENSMUSG00195047841	lncRNA gene	Chr4:105429580-105431661 (-)
AKR/J	ENSMUSG00220012889	lncRNA gene	Chr4:104791594-104793676 (-)
BALB/cJ	ENSMUSG00180048206	lncRNA gene	Chr4:104264349-104266430 (-)
C3H/HeJ	ENSMUSG00175044325	lncRNA gene	Chr4:105268577-105270658 (-)
C57BL/6NJ	ENSMUSG00215036407	lncRNA gene	Chr4:105166605-105168687 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003539	antisense lncRNA gene	Chr4:102080088-102081185 (-)
CAST/EiJ	ENSTCUG00005023163	lncRNA gene	Chr4:104358236-104360319 (-)
CBA/J	ENSMUSG00210053512	lncRNA gene	Chr4:104901605-104903686 (-)
DBA/2J	ENSMUSG00185051076	lncRNA gene	Chr4:105595397-105597478 (-)
FVB/NJ	ENSMUSG00205044464	lncRNA gene	Chr4:103832789-103834870 (-)
JF1/MsJ	ENSUMUG00000050131	lncRNA gene	Chr4:105613441-105614609 (-)
JF1/MsJ	ENSUMUG00000050167	lncRNA gene	Chr4:105612526-105614587 (-)
LP/J	ENSMUSG00230009359	lncRNA gene	Chr4:108915529-108917610 (-)
NOD/ShiLtJ	ENSMUSG00190049234	lncRNA gene	Chr4:104271384-104273465 (-)
NZO/HlLtJ	ENSMUSG00225011439	lncRNA gene	Chr4:114016334-114018416 (-)
PWK/PhJ	ENSLUMG00010049343	lncRNA gene	Chr4:103319199-103321282 (-)
SPRET/EiJ	ENSMSPG00010031769	lncRNA gene	Chr4:105561383-105563455 (-)
WSB/EiJ	ENSIUOG00005044669	lncRNA gene	Chr4:104449686-104451767 (-)

Homology

• Gene Tree
  Dmrta2os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Dmrta2os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1

• Ensembl
  ENSMUSG00000085256 (Evidence)
• NCBI Gene
  77453

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085256	Ensembl Gene Model | MGI Sequence Detail	2096	C57BL/6J
transcript	ENSMUST00000124754	Ensembl | MGI Sequence Detail	1854	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Dmrta2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42784	Chr4:109835048-109835096 (-)	42 bp