9530018H14Rik Gene Detail

Summary

• Symbol
  9530018H14Rik
• Name
  RIKEN cDNA 9530018H14 gene
• Synonyms
  LncRNA-HIT

• Feature Type
  lncRNA gene
• IDs
  MGI:1924645
  NCBI Gene: 77395
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:52233198-52234440 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924645	lncRNA gene	Chr6:52233198-52234440 (-)
129S1/SvImJ	ENSMUSG00200005314	unclassified gene	Chr6:49210486-49211728 (-)
A/J	ENSMUSG00195006860	unclassified gene	Chr6:48934400-48935642 (-)
AKR/J	ENSMUSG00220004846	unclassified gene	Chr6:48643496-48644738 (-)
BALB/cJ	ENSMUSG00180024317	unclassified gene	Chr6:49236130-49237372 (-)
C3H/HeJ	ENSMUSG00175017348	unclassified gene	Chr6:49002738-49003980 (-)
C57BL/6NJ	ENSMUSG00215009737	unclassified gene	Chr6:49186979-49188221 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001671	unclassified gene	Chr6:46739606-46740834 (-)
CAST/EiJ	ENSTCUG00005005100	unclassified gene	Chr6:48493113-48494354 (-)
CBA/J	ENSMUSG00210018630	unclassified gene	Chr6:49047050-49048292 (-)
DBA/2J	ENSMUSG00185014270	unclassified gene	Chr6:49629274-49630516 (-)
FVB/NJ	ENSMUSG00205028488	unclassified gene	Chr6:49287356-49288598 (-)
JF1/MsJ	ENSUMUG00000013565	unclassified gene	Chr6:49002077-49003317 (-)
LP/J	ENSMUSG00230019641	unclassified gene	Chr6:50707777-50709019 (-)
NOD/ShiLtJ	ENSMUSG00190039286	unclassified gene	Chr6:48964431-48965672 (-)
NZO/HlLtJ	ENSMUSG00225013719	unclassified gene	Chr6:52691774-52693016 (-)
PWK/PhJ	ENSLUMG00010021733	unclassified gene	Chr6:48739179-48740419 (-)
SPRET/EiJ	ENSMSPG00010009738	unclassified gene	Chr6:49323003-49324238 (-)
WSB/EiJ	ENSIUOG00005028173	unclassified gene	Chr6:49309832-49311074 (-)

Homology

• Gene Tree
  9530018H14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 9530018H14Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  622
• Tissues
  24
• cDNA Data
  1
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000102373 (Evidence)
• NCBI Gene
  77395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102373	Ensembl Gene Model | MGI Sequence Detail	1243	C57BL/6J
transcript	AK020562	GenBank | ENA | DDBJ | MGI Sequence Detail	1245	C57BL/6J

Molecular
Reagents

• All nucleic 5

  cDNA 1

  Primer pair 3

  Other 1

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Developmental Gene Expression 2

  Phenotypes 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302776 Carlson HL, et al., Development and functional characterization of a lncRNA-HIT conditional loss of function allele. Genesis. 2020 Mar;58(3-4):e23351