9530003O04Rik Gene Detail

Summary

• Symbol
  9530003O04Rik
• Name
  RIKEN cDNA 9530003O04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924641
  NCBI Gene: 77391
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:77451419-77452326 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924641	lncRNA gene	Chr16:77451419-77452326 (+)
129S1/SvImJ	ENSMUSG00200016186	unclassified gene	Chr16:74327320-74328227 (+)
A/J	ENSMUSG00195023879	unclassified gene	Chr16:74110992-74111899 (+)
AKR/J	ENSMUSG00220018162	unclassified gene	Chr16:74294721-74295628 (+)
BALB/cJ	ENSMUSG00180002171	unclassified gene	Chr16:74186185-74187092 (+)
C3H/HeJ	ENSMUSG00175009098	unclassified gene	Chr16:74473804-74474711 (+)
C57BL/6NJ	ENSMUSG00215001660	unclassified gene	Chr16:74310092-74310999 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000745	unclassified gene	Chr16:72818626-72819534 (+)
CAST/EiJ	ENSTCUG00005007546	unclassified gene	Chr16:74125953-74126860 (+)
CBA/J	ENSMUSG00210019754	unclassified gene	Chr16:74418869-74419776 (+)
DBA/2J	ENSMUSG00185005149	unclassified gene	Chr16:74345492-74346399 (+)
FVB/NJ	ENSMUSG00205015005	unclassified gene	Chr16:74204590-74205497 (+)
JF1/MsJ	ENSUMUG00000016036	unclassified gene	Chr16:74500710-74501617 (+)
LP/J	ENSMUSG00230020223	unclassified gene	Chr16:76913613-76914520 (+)
NOD/ShiLtJ	ENSMUSG00190011768	unclassified gene	Chr16:74345025-74345932 (+)
NZO/HlLtJ	ENSMUSG00225029603	unclassified gene	Chr16:80119241-80120148 (+)
PWK/PhJ	ENSLUMG00010005423	unclassified gene	Chr16:74154208-74155115 (+)
SPRET/EiJ	ENSMSPG00010015508	unclassified gene	Chr16:75030756-75031663 (+)
WSB/EiJ	ENSIUOG00005017605	unclassified gene	Chr16:74344148-74345055 (+)

Homology

• Gene Tree
  9530003O04Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  3
• Genomic Mutations
  4 involving 9530003O04Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000102267 (Evidence)
• NCBI Gene
  77391

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102267	Ensembl Gene Model | MGI Sequence Detail	908	C57BL/6J
transcript	AK020539	GenBank | ENA | DDBJ | MGI Sequence Detail	906	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:361105 Tateossian H, et al., DYRK1A kinase triplication is the major cause of Otitis Media in Down Syndrome. Elife. 2025;

TSS for 9530003O04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139111	Chr16:77450596-77450602 (+)	-820 bp