9430085M18Rik Gene Detail

Summary

• Symbol
  9430085M18Rik
• Name
  RIKEN cDNA 9430085M18 gene
• Synonyms
  Gm43270

• Feature Type
  lncRNA gene
• IDs
  MGI:1924611
  NCBI Gene: 77361
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:101851452-101856134 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  309 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924611	lncRNA gene	Chr5:101851436-101890659 (+)
129S1/SvImJ	ENSMUSG00200006402	lncRNA gene	Chr5:95594336-95597433 (+)
A/J	ENSMUSG00195036943	lncRNA gene	Chr5:95160869-95163765 (+)
AKR/J	ENSMUSG00220039373	lncRNA gene	Chr5:94642674-94645771 (+)
BALB/cJ	ENSMUSG00180035140	lncRNA gene	Chr5:95316379-95319477 (+)
C3H/HeJ	ENSMUSG00175033683	lncRNA gene	Chr5:97421469-97424365 (+)
C57BL/6NJ	ENSMUSG00215026571	lncRNA gene	Chr5:95236986-95239882 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006113	lincRNA gene	Chr5:94619360-94621650 (+)
CAST/EiJ	ENSTCUG00005024432	lncRNA gene	Chr5:94600966-94603858 (+)
CBA/J	ENSMUSG00210034200	lncRNA gene	Chr5:96171781-96174677 (+)
DBA/2J	ENSMUSG00185037960	lncRNA gene	Chr5:99091319-99092063 (+)
FVB/NJ	ENSMUSG00205039911	lncRNA gene	Chr5:95067731-95070617 (+)
JF1/MsJ	ENSUMUG00000020634	lncRNA gene	Chr5:102042775-102045292 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190026911	lncRNA gene	Chr5:95066829-95069926 (+)
NZO/HlLtJ	ENSMUSG00225013068	lncRNA gene	Chr5:110905659-110908560 (+)
PWK/PhJ	ENSLUMG00010016285	lncRNA gene	Chr5:94159286-94162631 (+)
SPRET/EiJ	ENSMSPG00010027323	lncRNA gene	Chr5:97076305-97079366 (+)
WSB/EiJ	ENSIUOG00005031830	lncRNA gene	Chr5:97795402-97798299 (+)

Homology

• Gene Tree
  9430085M18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving 9430085M18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  3

• Ensembl
  ENSMUSG00000106164 (Evidence)
• NCBI Gene
  77361

Representative Sequences			Length	Strain/Species
genomic	77361	NCBI Gene Model | MGI Sequence Detail	4683	C57BL/6J
transcript	NR_190100	RefSeq | MGI Sequence Detail	2513	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:5663407

References

• Summaries
  All 19

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 9430085M18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1559	Chr5:101851444-101851481 (+)	11 bp