9430065F17Rik Gene Detail

Summary

• Symbol
  9430065F17Rik
• Name
  RIKEN cDNA 9430065F17 gene
• Synonyms
  E130110G22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1924606
  NCBI Gene: 77857
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:67701006-67712129 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  437 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924606	lncRNA gene	Chr13:67701006-67719011 (+)
129S1/SvImJ	ENSMUSG00200013802	lncRNA gene	Chr13:62466127-62477035 (+)
A/J	ENSMUSG00195031782	lncRNA gene	Chr13:62744343-62755274 (+)
AKR/J	ENSMUSG00220038841	lncRNA gene	Chr13:61701834-61712743 (+)
BALB/cJ	ENSMUSG00180029695	lncRNA gene	Chr13:63223746-63234677 (+)
C3H/HeJ	ENSMUSG00175008676	lncRNA gene	Chr13:63535332-63546277 (+)
C57BL/6NJ	ENSMUSG00215017900	lncRNA gene	Chr13:63227340-63238317 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004973	lincRNA gene	Chr13:62865105-62875828 (+)
CAST/EiJ	ENSTCUG00005012242	lncRNA gene	Chr13:63236412-63247365 (+)
CBA/J	ENSMUSG00210009519	lncRNA gene	Chr13:62857714-62868658 (+)
DBA/2J	ENSMUSG00185010110	lncRNA gene	Chr13:66553338-66564283 (+)
FVB/NJ	ENSMUSG00205027891	lncRNA gene	Chr13:62277559-62288494 (+)
JF1/MsJ	ENSUMUG00000034310	lncRNA gene	Chr13:66221358-66232335 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190040678	lncRNA gene	Chr13:62840010-62850953 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012739	lncRNA gene	Chr13:62335844-62346866 (+)
SPRET/EiJ	ENSMSPG00010034587	lncRNA gene	Chr13:63201301-63210277 (+)
WSB/EiJ	ENSIUOG00005023864	lncRNA gene	Chr13:62016073-62026994 (+)

Homology

• Gene Tree
  9430065F17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9430065F17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  3

• Ensembl
  ENSMUSG00000097360 (Evidence)
• NCBI Gene
  77857

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097360	Ensembl Gene Model | MGI Sequence Detail	11124	C57BL/6J
transcript	ENSMUST00000224664	Ensembl | MGI Sequence Detail	1431	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1925107

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573