9530026F06Rik Gene Detail

Summary

• Symbol
  9530026F06Rik
• Name
  RIKEN cDNA 9530026F06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924591
  NCBI Gene: 77341
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:61417591-61435063 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 30.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  598 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924591	lncRNA gene	Chr1:61411994-61435074 (+)
129S1/SvImJ	ENSMUSG00200018910	lncRNA gene	Chr1:58919512-58936985 (+)
A/J	ENSMUSG00195030407	lncRNA gene	Chr1:58451352-58468827 (+)
AKR/J	ENSMUSG00220042915	lncRNA gene	Chr1:58533858-58551346 (+)
BALB/cJ	ENSMUSG00180014531	lncRNA gene	Chr1:58714084-58731571 (+)
C3H/HeJ	ENSMUSG00175001195	lncRNA gene	Chr1:58834497-58851968 (+)
C57BL/6NJ	ENSMUSG00215034916	lncRNA gene	Chr1:58766435-58783908 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004388	lincRNA gene	Chr1:55482818-55500110 (+)
CAST/EiJ	ENSTCUG00005014652	lncRNA gene	Chr1:58591577-58616449 (+)
CBA/J	ENSMUSG00210054185	lncRNA gene	Chr1:58520187-58537661 (+)
DBA/2J	ENSMUSG00185055491	lncRNA gene	Chr1:59639251-59656725 (+)
FVB/NJ	ENSMUSG00205024195	lncRNA gene	Chr1:58472026-58489498 (+)
JF1/MsJ	ENSUMUG00000050037	lncRNA gene	Chr1:58591725-58609283 (+)
LP/J	ENSMUSG00230029854	lncRNA gene	Chr1:59639443-59656915 (+)
NOD/ShiLtJ	ENSMUSG00190042620	lncRNA gene	Chr1:58707165-58724650 (+)
NZO/HlLtJ	ENSMUSG00225001411	lncRNA gene	Chr1:62864028-62881500 (+)
PWK/PhJ	ENSLUMG00010027105	lncRNA gene	Chr1:58121989-58139465 (+)
SPRET/EiJ	ENSMSPG00010028499	lncRNA gene	Chr1:60084852-60103723 (+)
WSB/EiJ	ENSIUOG00005022293	lncRNA gene	Chr1:58305018-58322511 (+)

Homology

• Gene Tree
  9530026F06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9530026F06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000085447 (Evidence)
• NCBI Gene
  77341

Representative Sequences			Length	Strain/Species
genomic	77341	NCBI Gene Model | MGI Sequence Detail	17473	C57BL/6J
transcript	NR_040483	RefSeq | MGI Sequence Detail	892	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573