C030010C08Rik Gene Detail

Summary

• Symbol
  C030010C08Rik
• Name
  RIKEN cDNA C030010C08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924579
  NCBI Gene: 77329
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:63961797-63963301 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924579	lncRNA gene	Chr13:63961797-63963301 (-)
129S1/SvImJ	ENSMUSG00200017006	lncRNA gene	Chr13:60097800-60098968 (-)
A/J	ENSMUSG00195045021	lncRNA gene	Chr13:60257310-60258476 (-)
AKR/J	ENSMUSG00220045808	lncRNA gene	Chr13:59339423-59340591 (-)
BALB/cJ	ENSMUSG00180026349	lncRNA gene	Chr13:60553721-60554896 (-)
C3H/HeJ	ENSMUSG00175043104	lncRNA gene	Chr13:60383009-60384175 (-)
C57BL/6NJ	ENSMUSG00215013447	lncRNA gene	Chr13:60372798-60373963 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012068	lncRNA gene	Chr13:60754557-60755725 (-)
CBA/J	ENSMUSG00210009323	lncRNA gene	Chr13:60582477-60583643 (-)
DBA/2J	ENSMUSG00185009310	lncRNA gene	Chr13:61421565-61422731 (-)
FVB/NJ	ENSMUSG00205046965	lncRNA gene	Chr13:59557079-59558247 (-)
JF1/MsJ	ENSUMUG00000039281	lncRNA gene	Chr13:61030733-61031898 (-)
LP/J	ENSMUSG00230034434	lncRNA gene	Chr13:70772173-70773339 (-)
NOD/ShiLtJ	ENSMUSG00190041655	lncRNA gene	Chr13:60330871-60332037 (-)
NZO/HlLtJ	ENSMUSG00225047281	lncRNA gene	Chr13:64482307-64483473 (-)
PWK/PhJ	ENSLUMG00010025520	lncRNA gene	Chr13:59867711-59868889 (-)
SPRET/EiJ	ENSMSPG00010042049	lncRNA gene	Chr13:60087762-60088970 (-)
WSB/EiJ	ENSIUOG00005026584	lncRNA gene	Chr13:59052215-59053380 (-)

Homology

• Gene Tree
  C030010C08Rik
  

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121054 (Evidence)
• NCBI Gene
  77329

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121054	Ensembl Gene Model | MGI Sequence Detail	1505	C57BL/6J
transcript	ENSMUST00000247007	Ensembl | MGI Sequence Detail	1505	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for C030010C08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122991	Chr13:63962929-63962979 (-)	347 bp