9430007M09Rik Gene Detail

Summary

• Symbol
  9430007M09Rik
• Name
  RIKEN cDNA 9430007M09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924520
  NCBI Gene: 77270
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:135293180-135293983 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924520	lncRNA gene	Chr5:135293180-135293983 (+)
129S1/SvImJ	ENSMUSG00200048910	unclassified gene	Chr5:129076330-129077133 (+)
A/J	ENSMUSG00195051786	unclassified gene	Chr5:128582865-128583668 (+)
AKR/J	ENSMUSG00220051288	unclassified gene	Chr5:128070273-128071076 (+)
BALB/cJ	ENSMUSG00180046021	unclassified gene	Chr5:128687568-128688371 (+)
C3H/HeJ	ENSMUSG00175043247	unclassified gene	Chr5:130613678-130614481 (+)
C57BL/6NJ	ENSMUSG00215049318	unclassified gene	Chr5:128732646-128733449 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001575	unclassified gene	Chr5:128095786-128096593 (+)
CAST/EiJ	ENSTCUG00005010943	unclassified gene	Chr5:127966421-127967227 (+)
CBA/J	ENSMUSG00210008052	unclassified gene	Chr5:129431334-129432137 (+)
DBA/2J	ENSMUSG00185054994	unclassified gene	Chr5:132446575-132447378 (+)
FVB/NJ	ENSMUSG00205050230	unclassified gene	Chr5:128334536-128335339 (+)
JF1/MsJ	ENSUMUG00000053614	unclassified gene	Chr5:135343889-135344688 (+)
LP/J	ENSMUSG00230049561	unclassified gene	Chr5:136562120-136562923 (+)
NOD/ShiLtJ	ENSMUSG00190048881	unclassified gene	Chr5:128388058-128388861 (+)
NZO/HlLtJ	ENSMUSG00225023781	unclassified gene	Chr5:144241824-144242627 (+)
PWK/PhJ	ENSLUMG00010018546	unclassified gene	Chr5:127191797-127192595 (+)
SPRET/EiJ	ENSMSPG00010033211	unclassified gene	Chr5:130599373-130600171 (+)
WSB/EiJ	ENSIUOG00005035639	unclassified gene	Chr5:131033446-131034250 (+)

Homology

• Gene Tree
  9430007M09Rik
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving 9430007M09Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000106913 (Evidence)
• NCBI Gene
  77270

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106913	Ensembl Gene Model | MGI Sequence Detail	804	C57BL/6J
transcript	AK020407	GenBank | ENA | DDBJ | MGI Sequence Detail	805	C57BL/6J

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

References

• Summaries
  All 20

  Diseases 2

  Phenotypes 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:373971 Gutzen R, et al., A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. Cell Rep Methods. 2024 Jan 22;4(1):100681