A930002I21Rik Gene Detail

Summary

• Symbol
  A930002I21Rik
• Name
  RIKEN cDNA A930002I21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924480
  NCBI Gene: 109226
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:106998163-107005941 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  289 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924480	lncRNA gene	Chr3:106998163-107005941 (+)
129S1/SvImJ	ENSMUSG00200035823	lncRNA gene	Chr3:103612971-103620580 (+)
A/J	ENSMUSG00195025666	lncRNA gene	Chr3:104029816-104037430 (+)
AKR/J	ENSMUSG00220034793	lncRNA gene	Chr3:102400367-102407994 (+)
BALB/cJ	ENSMUSG00180019548	lncRNA gene	Chr3:103986844-103994450 (+)
C3H/HeJ	ENSMUSG00175030134	lncRNA gene	Chr3:103510048-103517662 (+)
C57BL/6NJ	ENSMUSG00215034928	lncRNA gene	Chr3:104247777-104255386 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005703	lincRNA gene	Chr3:101276389-101283868 (+)
CAST/EiJ	ENSTCUG00005027878	lncRNA gene	Chr3:104516010-104523616 (+)
CBA/J	ENSMUSG00210008888	lncRNA gene	Chr3:104131960-104139574 (+)
DBA/2J	ENSMUSG00185022333	lncRNA gene	Chr3:104608113-104615736 (+)
FVB/NJ	ENSMUSG00205033215	lncRNA gene	Chr3:103174991-103182600 (+)
JF1/MsJ	ENSUMUG00000005723	lncRNA gene	Chr3:103568599-103576211 (+)
LP/J	ENSMUSG00230020282	lncRNA gene	Chr3:106526050-106533659 (+)
NOD/ShiLtJ	ENSMUSG00190041142	lncRNA gene	Chr3:104845466-104853072 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010025306	lncRNA gene	Chr3:103420147-103427719 (+)
SPRET/EiJ	ENSMSPG00010037143	lncRNA gene	Chr3:103951032-103958623 (+)
WSB/EiJ	ENSIUOG00005004635	lncRNA gene	Chr3:104160404-104168022 (+)

Homology

• Gene Tree
  A930002I21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A930002I21Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• UniProt
  1

• Ensembl
  ENSMUSG00000050179 (Evidence)
• NCBI Gene
  109226

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050179	Ensembl Gene Model | MGI Sequence Detail	7779	C57BL/6J
transcript	ENSMUST00000284485	Ensembl | MGI Sequence Detail	1813	Not Applicable
polypeptide	Q8BFY1	UniProt | EBI | MGI Sequence Detail	121	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A930002I21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31150	Chr3:106998158-106998167 (+)	0 bp
Tssr31151	Chr3:106998190-106998221 (+)	43 bp
Tssr31152	Chr3:106998229-106998246 (+)	75 bp
Tssr31153	Chr3:106998264-106998279 (+)	109 bp
Tssr31154	Chr3:106998724-106998739 (+)	569 bp
Tssr31155	Chr3:106998746-106998758 (+)	589 bp