8030453O22Rik Gene Detail

Summary

• Symbol
  8030453O22Rik
• Name
  RIKEN cDNA 8030453O22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924459
  NCBI Gene: 77209
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:39504475-39521423 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 18.34 cM, cytoband B1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  532 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924459	lncRNA gene	Chr6:39504436-39521423 (+)
129S1/SvImJ	ENSMUSG00200046233	lncRNA gene	Chr6:36559970-36576950 (+)
A/J	ENSMUSG00195042615	lncRNA gene	Chr6:36531703-36548674 (+)
AKR/J	ENSMUSG00220009527	lncRNA gene	Chr6:36130382-36147354 (+)
BALB/cJ	ENSMUSG00180047779	lncRNA gene	Chr6:36660182-36677149 (+)
C3H/HeJ	ENSMUSG00175050930	lncRNA gene	Chr6:36487288-36504253 (+)
C57BL/6NJ	ENSMUSG00215048043	lncRNA gene	Chr6:36566457-36583436 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013752	unclassified non-coding RNA gene	Chr6:34156390-34173198 (+)
CAST/EiJ	ENSTCUG00005036822	lncRNA gene	Chr6:36063964-36080839 (+)
CBA/J	ENSMUSG00210052068	lncRNA gene	Chr6:36539160-36556133 (+)
DBA/2J	ENSMUSG00185049480	lncRNA gene	Chr6:36641621-36658590 (+)
FVB/NJ	ENSMUSG00205050037	lncRNA gene	Chr6:36616552-36633749 (+)
JF1/MsJ	ENSUMUG00000030765	lncRNA gene	Chr6:36295089-36312049 (+)
LP/J	ENSMUSG00230044096	lncRNA gene	Chr6:37565448-37582421 (+)
NOD/ShiLtJ	ENSMUSG00190048324	lncRNA gene	Chr6:36406045-36423024 (+)
NZO/HlLtJ	ENSMUSG00225009889	lncRNA gene	Chr6:39548050-39565019 (+)
PWK/PhJ	ENSLUMG00010047263	lncRNA gene	Chr6:36068199-36084879 (+)
SPRET/EiJ	ENSMSPG00010030782	lncRNA gene	Chr6:36680107-36694441 (+)
WSB/EiJ	ENSIUOG00005033206	lncRNA gene	Chr6:36741277-36758254 (+)

Homology

• Gene Tree
  8030453O22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  23
• Gene trapped
  23
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000085058 (Evidence)
• NCBI Gene
  77209

Representative Sequences			Length	Strain/Species
genomic	77209	NCBI Gene Model | MGI Sequence Detail	16949	C57BL/6J
transcript	NR_167679	RefSeq | MGI Sequence Detail	1692	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 8030453O22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55729	Chr6:39504469-39504484 (+)	2 bp