A930005N03Rik Gene Detail

Summary

• Symbol
  A930005N03Rik
• Name
  RIKEN cDNA A930005N03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924441
  NCBI Gene: 77191
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:34308963-34310209 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924441	lncRNA gene	Chr1:34308963-34310209 (-)
129S1/SvImJ	ENSMUSG00200004958	unclassified gene	Chr1:31850211-31851502 (-)
A/J	ENSMUSG00195043067	unclassified gene	Chr1:31522292-31523538 (-)
AKR/J	ENSMUSG00220009995	unclassified gene	Chr1:31548459-31549750 (-)
BALB/cJ	ENSMUSG00180011795	unclassified gene	Chr1:31634322-31635568 (-)
C3H/HeJ	ENSMUSG00175001359	unclassified gene	Chr1:31526624-31527870 (-)
C57BL/6NJ	ENSMUSG00215029317	unclassified gene	Chr1:31611344-31612590 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000247	unclassified gene	Chr1:29052030-29053268 (-)
CAST/EiJ	ENSTCUG00005003079	unclassified gene	Chr1:31673216-31674465 (-)
CBA/J	ENSMUSG00210006701	unclassified gene	Chr1:31372384-31373675 (-)
DBA/2J	ENSMUSG00185011442	unclassified gene	Chr1:32436533-32437779 (-)
FVB/NJ	ENSMUSG00205038792	unclassified gene	Chr1:31552061-31553307 (-)
JF1/MsJ	ENSUMUG00000026070	unclassified gene	Chr1:31656076-31657322 (-)
LP/J	ENSMUSG00230027331	unclassified gene	Chr1:32492364-32493655 (-)
NOD/ShiLtJ	ENSMUSG00190039350	unclassified gene	Chr1:31532966-31534212 (-)
NZO/HlLtJ	ENSMUSG00225014443	unclassified gene	Chr1:35756394-35757640 (-)
PWK/PhJ	ENSLUMG00010037685	unclassified gene	Chr1:31228139-31229388 (-)
SPRET/EiJ	ENSMSPG00010028511	unclassified gene	Chr1:32630022-32631270 (-)
WSB/EiJ	ENSIUOG00005040681	unclassified gene	Chr1:31532172-31533418 (-)

Homology

• Gene Tree
  A930005N03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A930005N03Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000103001 (Evidence)
• NCBI Gene
  77191

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103001	Ensembl Gene Model | MGI Sequence Detail	1247	C57BL/6J
transcript	AK020813	GenBank | ENA | DDBJ | MGI Sequence Detail	1247	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573