A930024E05Rik MGI Mouse Gene Detail - MGI:1924414

Symbol

A930024E05Rik
Name

RIKEN cDNA A930024E05 gene
Synonyms

Kancr, LncKdm2b

Feature Type

lncRNA gene
IDs

MGI:1924414
NCBI Gene: 109202
Alliance

genome feature page
Transcription Start Sites

10 TSS

Sequence Map

Chr5:123127417-123136408 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 5, 62.71 cM
Mapping Data

1 experiment

SNPs within 2kb

290 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924414	lncRNA gene	Chr5:123124819-123136412 (+)
129S1/SvImJ	ENSMUSG00200029761	lncRNA gene	Chr5:116859679-116868903 (+)
129S1/SvImJ	ENSMUSG00200023494	protein coding gene	Chr5:116859549-116869012 (+)
A/J	ENSMUSG00195012961	lncRNA gene	Chr5:116381096-116390319 (+)
A/J	ENSMUSG00195009132	protein coding gene	Chr5:116380966-116390428 (+)
AKR/J	ENSMUSG00220039157	protein coding gene	Chr5:115889040-115898236 (+)
AKR/J	ENSMUSG00220047625	lncRNA gene	Chr5:115889174-115898167 (+)
BALB/cJ	ENSMUSG00180041724	lncRNA gene	Chr5:116496064-116505288 (+)
BALB/cJ	ENSMUSG00180030319	protein coding gene	Chr5:116495934-116505397 (+)
C3H/HeJ	ENSMUSG00175033906	lncRNA gene	Chr5:118509048-118518040 (+)
C3H/HeJ	ENSMUSG00175021108	protein coding gene	Chr5:118508914-118518109 (+)
C57BL/6NJ	ENSMUSG00215044630	lncRNA gene	Chr5:116534887-116543883 (+)
C57BL/6NJ	ENSMUSG00215020374	protein coding gene	Chr5:116534753-116543952 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003764	antisense lncRNA gene	Chr5:116010609-116019517 (+)
CAST/EiJ	ENSTCUG00005042147	lncRNA gene	Chr5:115800651-115809633 (+)
CBA/J	ENSMUSG00210007447	protein coding gene	Chr5:117259706-117268900 (+)
CBA/J	ENSMUSG00210010937	lncRNA gene	Chr5:117259840-117268831 (+)
DBA/2J	ENSMUSG00185044132	protein coding gene	Chr5:120310943-120320135 (+)
DBA/2J	ENSMUSG00185054401	lncRNA gene	Chr5:120311077-120320066 (+)
FVB/NJ	ENSMUSG00205030977	protein coding gene	Chr5:116165030-116174225 (+)
FVB/NJ	ENSMUSG00205046861	lncRNA gene	Chr5:116165164-116174156 (+)
JF1/MsJ	ENSUMUG00000052220	lncRNA gene	Chr5:123171217-123180204 (+)
LP/J	ENSMUSG00230047998	lncRNA gene	Chr5:124381685-124390908 (+)
LP/J	ENSMUSG00230039315	protein coding gene	Chr5:124381555-124391017 (+)
NOD/ShiLtJ	ENSMUSG00190028908	protein coding gene	Chr5:116185374-116194569 (+)
NOD/ShiLtJ	ENSMUSG00190047527	lncRNA gene	Chr5:116185508-116194500 (+)
NZO/HlLtJ	ENSMUSG00225015580	protein coding gene	Chr5:132067726-132076921 (+)
NZO/HlLtJ	ENSMUSG00225017170	lncRNA gene	Chr5:132067860-132076852 (+)
PWK/PhJ	ENSLUMG00010045514	lncRNA gene	Chr5:115070234-115079223 (+)
SPRET/EiJ	ENSMSPG00010047195	lncRNA gene	Chr5:118384439-118393434 (+)
WSB/EiJ	ENSIUOG00005020448	lncRNA gene	Chr5:118875970-118885193 (+)

less

Gene Tree

A930024E05Rik

less

Phenotype Summary

5 phenotypes from 1 allele in 2 genetic backgrounds
3 phenotypes from multigenic genotypes
9 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

63
Chemically induced (other)

1
Endonuclease-mediated

2
Gene trapped

59
Radiation induced

1
Genomic Mutations

2 involving A930024E05Rik
Find Mice (IMSR)

85 strains or lines available

Mice homozygous for a conditional allele activated in thymocytes exhibit decreased ILC3 with increased susceptibility to C. rodentium infection.

less

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

633
Tissues

10
cDNA Data

13
Literature Summary

7

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

less

All Sequences

51
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000056735 (Evidence)
NCBI Gene

109202

			Length	Strain/Species	Flank
genomic	109202	NCBI Gene Model \| MGI Sequence Detail	8992	C57BL/6J	± kb
transcript	NR_045820	RefSeq \| MGI Sequence Detail	1907	C57BL/6
polypeptide	Q8C957	UniProt \| EBI \| MGI Sequence Detail	148	Not Applicable

less

UniProt

2 Sequences

less

All nucleic 17

cDNA 13

Primer pair 4

Microarray probesets 2

Summaries

All 30

Developmental Gene Expression 7

Phenotypes 9
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:314103 Ulmke PA, et al., Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex. Stem Cell Reports. 2021 Apr 13;16(4):968-984

TSS for A930024E05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48729	Chr5:123125643-123125675 (+)	-1,758 bp
Tssr48730	Chr5:123127305-123127315 (+)	-107 bp
Tssr48731	Chr5:123127328-123127344 (+)	-81 bp
Tssr48732	Chr5:123127353-123127378 (+)	-51 bp
Tssr48733	Chr5:123127411-123127429 (+)	3 bp
Tssr48734	Chr5:123127638-123127675 (+)	240 bp
Tssr48735	Chr5:123127781-123127802 (+)	375 bp
Tssr48736	Chr5:123127807-123127825 (+)	399 bp
Tssr48737	Chr5:123127981-123128006 (+)	577 bp
Tssr48742	Chr5:123133162-123133165 (+)	5,747 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24