A930001A20Rik Gene Detail

Summary

• Symbol
  A930001A20Rik
• Name
  RIKEN cDNA A930001A20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924377
  NCBI Gene: 77127
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:15036261-15067787 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924377	lncRNA gene	Chr3:14977858-15067789 (+)
129S1/SvImJ	ENSMUSG00200018265	lncRNA gene	Chr3:11778688-11810225 (+)
A/J	ENSMUSG00195015961	lncRNA gene	Chr3:12060791-12092303 (+)
AKR/J	ENSMUSG00220009550	lncRNA gene	Chr3:12115901-12147439 (+)
BALB/cJ	ENSMUSG00180001069	lncRNA gene	Chr3:12087031-12118554 (+)
C3H/HeJ	ENSMUSG00175003251	lncRNA gene	Chr3:12084028-12115539 (+)
C57BL/6NJ	ENSMUSG00215001323	lncRNA gene	Chr3:12077972-12109505 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005573	lincRNA gene	Chr3:10355151-10386902 (+)
CAST/EiJ	ENSTCUG00005024810	lncRNA gene	Chr3:12007159-12043050 (+)
CBA/J	ENSMUSG00210001708	lncRNA gene	Chr3:12052911-12084424 (+)
DBA/2J	ENSMUSG00185000719	lncRNA gene	Chr3:12055597-12086739 (+)
FVB/NJ	ENSMUSG00205002710	lncRNA gene	Chr3:11784380-11815892 (+)
JF1/MsJ	ENSUMUG00000018934	lncRNA gene	Chr3:11881015-11905472 (+)
LP/J	ENSMUSG00230004819	lncRNA gene	Chr3:13980610-14012148 (+)
NOD/ShiLtJ	ENSMUSG00190002402	lncRNA gene	Chr3:12160850-12192395 (+)
NZO/HlLtJ	ENSMUSG00225000917	lncRNA gene	Chr3:16562277-16593445 (+)
PWK/PhJ	ENSLUMG00010003441	lncRNA gene	Chr3:12021357-12045750 (+)
SPRET/EiJ	ENSMSPG00010001880	lncRNA gene	Chr3:11839871-11865070 (+)
WSB/EiJ	ENSIUOG00005001446	lncRNA gene	Chr3:12136095-12167620 (+)

Homology

• Gene Tree
  A930001A20Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving A930001A20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  2

• Ensembl
  ENSMUSG00000098008 (Evidence)
• NCBI Gene
  77127

Representative Sequences			Length	Strain/Species
genomic	77127	NCBI Gene Model | MGI Sequence Detail	31527	C57BL/6J
transcript	NR_040549	RefSeq | MGI Sequence Detail	1581	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for A930001A20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28469	Chr3:15035338-15035345 (+)	-919 bp
Tssr28470	Chr3:15065970-15066011 (+)	29,730 bp